Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-VI1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52600 751 / 0 ATCWINV2 cell wall invertase 2 (.1.2) AT2G36190 721 / 0 ATCWINV4 cell wall invertase 4 (.1) AT3G13790 603 / 0 ATCWINV1, ATBFRUCT1 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) AT1G55120 575 / 0 ATFRUCT5, ATCWINV3 6-fructan exohydrolase, beta-fructofuranosidase 5 (.1.2.3) AT3G13784 520 / 5e-180 ATCWINV5 cell wall invertase 5 (.1) AT5G11920 505 / 2e-174 ATCWINV6 6-&1-fructan exohydrolase (.1.2) AT1G12240 456 / 2e-153 ATBETAFRUCT4, VAC-INV VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) AT1G62660 448 / 9e-151 Glycosyl hydrolases family 32 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G077400 [exp] 1036 / 0 AT3G52600 755 / 0.0 cell wall invertase 2 (.1.2) Potri.006G210600 [exp] 974 / 0 AT3G52600 770 / 0.0 cell wall invertase 2 (.1.2) Potri.006G227400 [exp] 567 / 0 AT3G13790 703 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Potri.006G227500 [exp] 562 / 0 AT3G13790 660 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Potri.003G112600 [exp] 469 / 1e-158 AT1G12240 882 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Potri.003G126300 [exp] 456 / 8e-154 AT1G12240 819 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Potri.015G127100 [exp] 437 / 2e-146 AT1G62660 712 / 0.0 Glycosyl hydrolases family 32 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014219 [exp] 754 / 0 AT2G36190 711 / 0.0 cell wall invertase 4 (.1) Lus10014217 [exp] 726 / 0 AT2G36190 688 / 0.0 cell wall invertase 4 (.1) Lus10021339 [exp] 721 / 0 AT2G36190 691 / 0.0 cell wall invertase 4 (.1) Lus10017015 [exp] 718 / 0 AT2G36190 683 / 0.0 cell wall invertase 4 (.1) Lus10008392 [exp] 580 / 0 AT3G13790 756 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10015614 [exp] 555 / 0 AT3G13790 658 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10037633 [exp] 555 / 0 AT3G13790 704 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10037632 [exp] 552 / 0 AT3G13790 648 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10001529 [exp] 541 / 0 AT3G13790 598 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10015613 [exp] 510 / 9e-176 AT3G13790 641 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0143 [poplar] [flax] B_Fructosidase PF00251 [poplar] [flax] Glyco_hydro_32N Glycosyl hydrolases family 32 N-terminal domain CL0004 [poplar] [flax] Concanavalin PF08244 [poplar] [flax] Glyco_hydro_32C Glycosyl hydrolases family 32 C terminal
Representative CDS sequence Show only first row Show all	>Potri.016G077500.1 pacid=42809799 polypeptide=Potri.016G077500.1.p locus=Potri.016G077500 ID=Potri.016G077500.1.v4.1 annot-version=v4.1 ATGATGGCTATGCCAAACACTCTCTCAGTTCTTGCTTTGTTTGCTTTGTTTTTTGTGCTAAGTAACAATGGAGCCGAGGCTTCTCATAAGATTTATCCTC AGTTTCAGACTCTTAGTGTTGAGAACGTGAATCAAGTCCATAGAACCGGGTATCACTTTCAGCCTCCTAGGAACTGGATCAACGATCCAAATGCACCTAT GTACTACAAGGGGCTATACCATCTATTCTACCAATACAACCCCAAAGGCGCAGTGTGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAGGATTTGATC AATTGGGAATCCCTTGAGCCTGCACTCTACCCTTCTAAATGGTTTGATAATTATGGATGTTGGTCTGGTTCAGCGACAATCCTTCCAAACGGTGAGCCTG TTATATTCTACACGGGTATTGCCGATAAAAATAACAGTCAGATCCAAAACTACGCAGTACCCGCAAACTTGTCGGATCCATATCTTCGTGAATGGGTTAA GCCCGATGATAATCCGATAGTGAACCCGGATGTTAGTGTAAACGGTAGCGCGTTCCGTGATCCGACCACTGCTTGGTGGGCTGATGGGCATTGGAGGATT TTGATAGGCAGCAGGAGGAACCATGTAGGGGTGGCATATTTGTACAGGAGTAGGGATTTGAAGAAATGGGCCAAGACCAAACACCCGTTACATTCAGTTC AGCGTACAGGTATGTGGGAATGCCCAGATTTTTTCCCTGTTTCATCATTCGGTGAAAATGGGCTGGATCCTTCAGTTAATGGACAAAATGTGAAACATGC ATTGAAGGTTAGCTTAGACTTGACAAGATACGAGTACTATACACTGGGTACTTACGATAATAAGAAGGAAAAGTATTTTCCTGATGAGGGCTTAGTTGAT GGTTGGGCTGGTCTTAGGTTAGATTATGGAAACTTTTATGCTTCTAAGACATTCTTTGACCCAAGTACGAATAGGAGGATTTTGTGGGGCTGGGTTAATG AGTCTGATGCTGTTCAACAAGATACGAACAAAGGGTGGGCAGGAATTCTGTCGATTCCTAGGAAGGTATGGCTAGATCCAAGTGGAAAGCAATTGCTGCA GTGGCCTGTTGTAGAATTGGAGAAATTAAGAGGGCACAATGTTCAACTGAGCAATCAAAAGCTCAACCAAGGTGATCATGTTCAAGTTAAAGGCATCACT GTTGCTCAGGCTGATGTTGATGTAACCTTTTCTTTCCCAAGCTTGGACAAAGCTGAGCCTTTTGATCCAAAATGGGCTAAGCTTGATGCACTTGATGTAT GTGCCCAAAAGGGTTCCAAAGCTCCTGGTGGACTTGGGCCATTTGGACTCCTGACATTAGCTTCAGAAAATCTTGAAGAATTCACTCCTGTCTTCTTTAA AGTATTTAAAGCAGTAGACAAGCATAAAGTTCTGTTGTGCTCTGATGCAAGGAGCTCTTCCCTAGGTGAAGGACTGTATAAACCATCTTTTGCTGGATTT GTTGATGTTGATTTAACTGACAAGAAACTTTCGCTCAGAAGTTTGATTGATCACTCTGTTGTAGAGAGTTTTGGAGCTGGAGGAAGAACTGCCATCACAT CCAGGGTTTATCCAACCATTGCAGTCTTTGAAAAGGCTCACTTGTACGTGTTCAACAATGGCAGCGAGACCATCACAGTGGAGAATCTTAATGCTTGGAG TATGAACTTACCTGTGATGAATGTCCCTATAAAGAACCGAGGGGGAGAGAATCCACGCAATGAATAA
AA sequence Show only first row Show all	>Potri.016G077500.1 pacid=42809799 polypeptide=Potri.016G077500.1.p locus=Potri.016G077500 ID=Potri.016G077500.1.v4.1 annot-version=v4.1 MMAMPNTLSVLALFALFFVLSNNGAEASHKIYPQFQTLSVENVNQVHRTGYHFQPPRNWINDPNAPMYYKGLYHLFYQYNPKGAVWGNIVWAHSVSKDLI NWESLEPALYPSKWFDNYGCWSGSATILPNGEPVIFYTGIADKNNSQIQNYAVPANLSDPYLREWVKPDDNPIVNPDVSVNGSAFRDPTTAWWADGHWRI LIGSRRNHVGVAYLYRSRDLKKWAKTKHPLHSVQRTGMWECPDFFPVSSFGENGLDPSVNGQNVKHALKVSLDLTRYEYYTLGTYDNKKEKYFPDEGLVD GWAGLRLDYGNFYASKTFFDPSTNRRILWGWVNESDAVQQDTNKGWAGILSIPRKVWLDPSGKQLLQWPVVELEKLRGHNVQLSNQKLNQGDHVQVKGIT VAQADVDVTFSFPSLDKAEPFDPKWAKLDALDVCAQKGSKAPGGLGPFGLLTLASENLEEFTPVFFKVFKAVDKHKVLLCSDARSSSLGEGLYKPSFAGF VDVDLTDKKLSLRSLIDHSVVESFGAGGRTAITSRVYPTIAVFEKAHLYVFNNGSETITVENLNAWSMNLPVMNVPIKNRGGENPRNE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G52600		ATCWINV2	cell wall invertase 2 (.1.2)		Potri.016G077500 [exp]	0	1	Pt-VI1.1
AT1G73220		1-Oct, ATOCT1	organic cation/carnitine trans...		Potri.012G037400 [exp]	1.41	0.8465
AT1G14190			Glucose-methanol-choline (GMC)...		Potri.010G168200 [exp]	7.34	0.8264
					Potri.001G240670 [exp]	9.05	0.7690
AT1G68800	TCP	TCP12, BRC2, TC...	BRANCHED 2, TCP domain protein...		Potri.012G059900 [exp]	17.32	0.7089
AT4G15920		SWEET17, AtSWEE...	Nodulin MtN3 family protein (....		Potri.013G013900 [exp]	19.13	0.7208
					Potri.001G426260 [exp]	19.20	0.8160
AT2G41290		SSL2	strictosidine synthase-like 2 ...		Potri.006G040900 [exp]	19.62	0.7433
AT5G27230			Frigida-like protein (.1)		Potri.005G044100 [exp]	21.00	0.8326
					Potri.012G100900 [exp]	22.09	0.7539
AT4G22290			Ubiquitin-specific protease fa...		Potri.002G176200 [exp]	25.39	0.7999

Compare expression of checked genes

Potri.016G077500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.