Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G33760 470 / 1e-159 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37380 465 / 2e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G26782 466 / 6e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 466 / 7e-157 MEF22 mitochondrial editing factor 22 (.1) AT1G08070 465 / 1e-155 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13770 460 / 3e-155 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G23330 457 / 5e-153 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 452 / 2e-152 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G46790 450 / 4e-151 CRR2 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G040100 [exp] 505 / 2e-171 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G322100 [exp] 490 / 2e-166 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G168800 [exp] 477 / 4e-162 AT2G02980 860 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G152000 [exp] 481 / 5e-162 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1) Potri.006G105700 [exp] 478 / 1e-161 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G128900 [exp] 477 / 3e-161 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G044700 [exp] 481 / 4e-161 AT3G22690 582 / 0.0 unknown protein Potri.018G071800 [exp] 477 / 1e-160 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G208000 [exp] 475 / 2e-160 AT2G03880 939 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040504 [exp] 482 / 1e-163 AT3G13770 904 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033026 [exp] 477 / 2e-160 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 479 / 3e-160 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10025490 [exp] 463 / 2e-156 AT2G33760 734 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024876 [exp] 470 / 3e-156 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1) Lus10029344 [exp] 461 / 8e-156 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030053 [exp] 460 / 4e-154 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000706 [exp] 462 / 9e-154 AT3G12770 878 / 0.0 mitochondrial editing factor 22 (.1) Lus10015414 [exp] 466 / 2e-153 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 465 / 2e-153 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF12854 [poplar] [flax] PPR_1 PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.016G077700.1 pacid=42808967 polypeptide=Potri.016G077700.1.p locus=Potri.016G077700 ID=Potri.016G077700.1.v4.1 annot-version=v4.1 ATGCTTCGTTTCTTCTCAGCTTCTACAGCTGCTGCAGCCATCTCAGACGCCATACCGCAACCTCAACAATCCACCTTAGATTCCAATGCCCAAATGAAAG ACATGATGGATCCTGATTTTTTTATCTCCACACTCTTCAAGTGTAGAAACATATTCCAAATCAAACAAGTTCATGCCCAAGTAACTACCACTGGTATTAT TCATGACCTCATTGTTGCTAACAAACTCCTATACATGTGCGCAAAACACAAAGATTTGGTCACTGCTCATCTTTTGTTTAATAAAATGGAAGAGAGAGAC CCAGTTTCTTGGAGTGTTATGATTGGTGGGTTTGTAAAAAATGGTGATTATGAACGTTGTTTTCAGACTTTTAGGGAGCTTATTAGAGCAGGGTCAAAAC CAGATAACTTTTCATTACCATTTGTTATAAAGGCTTGTAGGGATACAATGGGGTTGATTATGGGCAGATTGATTCACTCCACGGTTTTGAAAAATGGGTT ACATTTGGATAATTTTGTGTGTTCTACTTTAGTGGATATGTATGCCAAATGTGGCATGATTGACAACGCTAAGCAGCTGTTTGATAGAATGCCTAAGAAA GACCTTGTAACTCGGACAGTCATGATTGCTGGGTATGCTGAATGTGGAAAACCAAACGAATCATGGGTTTTGTTTGATCAGATGAGAAGAGATGGTTTTG TGCCCGATAAGGTTGCGATGGTGACTATAGTAAATGCTTGTGCTAAATTAGGTGCTATGAATAAGGCTCGGTTAGTTCATGATTATGTATGTGCTAGGAG ATATTCTTTGGATGTTGAATTGGGGACTGCGATGATTGATATGTATGCTAAGTGCGGAAGTATTGATTCCTCTAGGGAAATTTTCGATAGGATGGAACAA AAGAATGTGATTTCGTGGAGCGCGATGATTGGGGCTTATGGGTACCATGGACAAGGCAGGGAAGCTCTTGAGTTGTTTCATATGATGTTGAATAGTGGAA TAATACCGAATAGGATCACGTTCATTTCCTTGTTGTACGCTTGCAGTCATGCAGGTTTGGTCGATGATGGTCTTCAGCTTTTCTCTTTGATGTCAGTTAG TTATGGTGTGAGGCCTGATGTGAAGCACTACACTTGCATGGTTGATCTCTTGGGGCGTGCTGGGAGGCTAGATCAGGCATTGAGATTGATTGAGAATATG GAGGTTGAGAAAGATGAGGGGATATGGTGTGCTTTCCTTGGAGCATGTAGAATTCATAGACAGGTAGACTTGGCAGAGAAGGCAGCAAAATTGCTTCTCT CGCTACAAACTCAGAACCCGGGGCACTACATATTGCTTTCTAATATTTATGCAAATGCTGGCAGGTGGAAAGATGTGGCAAAGATTAGGAATCTGATGGC CAAAAGGAGGTTAAAGAAAATTCCTGGTTATACTTGGATTGAGGTGGATAACATTATTTATCGATTTGGTGCTGGAGATAATAGTCATCTTCGATCAAAG GAGATCTATGAGATGCTGAAGAGTTTGAGTCAGAAATTGGAATCGGCTGGTTATGTCCCTGATACAAACTCTGTGTTACATGATGTTGATGAGGAGGTTA AGCTTGGAATTTTGCATGCACATAGTGAGAAGTTGGCAATTGCATTTGGCCTTATTGCCACCCCCGACGGAACTCCTATCAGGATTACAAAGAATCTGAG GGTTTGTGGTGATTGTCACTCATTTTGTAAGCTGGTGTCAGCAATCACACAGAGGGATATCATTGTACGCGATGCTAACCGATTTCACCACTTTAAGGAA GGGATTTGTTCTTGTGGAGACTATTGGTAA
AA sequence Show only first row Show all	>Potri.016G077700.1 pacid=42808967 polypeptide=Potri.016G077700.1.p locus=Potri.016G077700 ID=Potri.016G077700.1.v4.1 annot-version=v4.1 MLRFFSASTAAAAISDAIPQPQQSTLDSNAQMKDMMDPDFFISTLFKCRNIFQIKQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEERD PVSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHSTVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKK DLVTRTVMIAGYAECGKPNESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELGTAMIDMYAKCGSIDSSREIFDRMEQ KNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIPNRITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRLIENM EVEKDEGIWCAFLGACRIHRQVDLAEKAAKLLLSLQTQNPGHYILLSNIYANAGRWKDVAKIRNLMAKRRLKKIPGYTWIEVDNIIYRFGAGDNSHLRSK EIYEMLKSLSQKLESAGYVPDTNSVLHDVDEEVKLGILHAHSEKLAIAFGLIATPDGTPIRITKNLRVCGDCHSFCKLVSAITQRDIIVRDANRFHHFKE GICSCGDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30700			Pentatricopeptide repeat (PPR)...		Potri.016G077700 [exp]	0	1
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Potri.002G157100 [exp]	1.73	0.8482
AT4G16390		SVR7	suppressor of variegation 7, p...		Potri.006G018600 [exp]	2.44	0.8505
AT5G48330		RUG2	RCC1/UVR8/GEF-like 2, Regulato...		Potri.014G198300 [exp]	3.16	0.8410
AT1G78590		NADK3, ATNADK-3	ARABIDOPSIS THALIANA NADH KINA...		Potri.011G104400 [exp]	4.24	0.8336
AT3G04710		TPR10	tetratricopeptide repeat 10, a...		Potri.013G042300 [exp]	4.89	0.8236
AT5G19750			Peroxisomal membrane 22 kDa (M...		Potri.016G029700 [exp]	7.93	0.7998
AT3G63510			FMN-linked oxidoreductases sup...		Potri.009G059900 [exp]	8.00	0.8303
AT4G02120			CTP synthase family protein (....		Potri.014G123200 [exp]	8.94	0.8167
AT3G21740		APO4	ACCUMULATION OF PHOTOSYSTEM ON...		Potri.017G037200 [exp]	11.61	0.8277
AT5G13230			Tetratricopeptide repeat (TPR)...		Potri.003G164900 [exp]	12.64	0.8272

Compare expression of checked genes

Potri.016G077700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.