Plant FIBer expression Database

Potri.016G078000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G52610 422 / 9e-145 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G210900
[exp]
539 / 0 AT3G52610 504 / 1e-176 unknown protein
Potri.006G210800
[exp]
276 / 2e-91 AT3G52610 206 / 2e-64 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014215
[exp]
526 / 0 AT3G52610 372 / 3e-125 unknown protein
Lus10022698
[exp]
520 / 0 AT3G52610 380 / 3e-128 unknown protein
Lus10014214
[exp]
469 / 8e-163 AT3G52610 484 / 5e-169 unknown protein
Lus10022699
[exp]
370 / 8e-126 AT3G52610 362 / 5e-123 unknown protein
PFAM info
Representative CDS sequence
>Potri.016G078000.1 pacid=42810381 polypeptide=Potri.016G078000.1.p locus=Potri.016G078000 ID=Potri.016G078000.1.v4.1 annot-version=v4.1
ATGTCTAGCCAGACGTTGATCAGTCCAGAAACAGTTGAGCCCAAGGGCCGAGCAGTGGGAGGCACCGAGCACAGCTGGTGCCGAGCGGTGCCTGGTGGCA
CTGGCATAGCCGTCTTGGCCATCCTCACATCTAAGCTCCCTCGAAACTCGGGTCTAGAGAATGCTCTCCACAAACTCCAAAATTCTCATCCAATCCTTAG
GTCAAGACTCCATTCTGGCAGCAACACGAACACATTTTCCTTCATTACATCTCTCACTCCTTTCATTAAACTGAAAGCATTCAACCTCTCGTCGACTTTC
AAAATCCTCGAAAACCCATTGAAACCAAAAAACCAATCTCTCTCACCCCTCCATCTGGTCCTTGAGCATGAACTTAACCAAAACTCATGGTATAACCATA
ACAAGGCACCATCTTTCATTAATGACATTCAAGATATGTTTTTTGCTACCACCTATGCCCTCCCTAACGAAAAGTGGGTACTGGTTCTTAGGCTTCATGC
CTCGGCGTGTGACCGAACCACGGCTGTGTCTTTGCTACAGGAACTGGTGGTGCTGGTGAGTGAAGAGGAGAAAGGTGCTCTGCAGAAGGAAATAGCAAAT
GAAGAGGAGGTTACTTCAAGTATTGAGGATCTTGTTCCTAATAAGAAGGCTAAGAAGGGTTTGTGGGAGCGTGGGATTGACATGCTTGGTTACTCGGTGA
ATTCACTTAGGCTAACAAATCTGAAATTCAAGGATTCAAAGTCACCAAGATCTTCTCAGGTGGTAAGGTTGCAGATGAACCAAAAGGACACGGAGAAGAT
CATCGCTGGCTGCAGATCAAGAGGAATTAAGCTGTGTGGGGCTTTGGCAAGTGCGGGATTAATAGCTGCACACAAATCTAAGAGTCGTGTGGATAAACAA
AGAAAGTATGCAGTCGTCACCTTGACTGACTGCAGATCAGTTCTTGATCCAACTCTTTCTAATCACCATTTTGGATTTTATCACTCCGCTATTCTGAATG
CTCATGTGATGAAAGGAGGAGAAAAGTTATGGGAGCTGGCCCAGAAAACGTACGCGGCATTTGCTAGCTACAAGAATTGCAACAGGCACTTCTCAGACAT
GGCAGATCTCAACTTCCTTATGTGTAAGGCCATTGATAATCCTGGCTTGACGCCATCATCTTCTCTCAGAACAGCTTTAGTGTCTGTGTTTGAAGATTCT
GTGGTAGATGATCATGCTGCCCTGCAGAAGGAAGTCGGTGTAGAGGACTACATGGGGTGTGCCTCTGCTCATGGTATAGGGCCTTCCATTGCAATTTTTG
ACACCATCAGAGATGGACGGTTGGATTGTGTCTGTGTGTATCCATCACCACTGCATTCAAGGGAGCAAATGCAAGAGTTCATTGACAGCATGAAGAGTGT
TCTTGTGGAGGGCTGCAACCACGTTTAG
AA sequence
>Potri.016G078000.1 pacid=42810381 polypeptide=Potri.016G078000.1.p locus=Potri.016G078000 ID=Potri.016G078000.1.v4.1 annot-version=v4.1
MSSQTLISPETVEPKGRAVGGTEHSWCRAVPGGTGIAVLAILTSKLPRNSGLENALHKLQNSHPILRSRLHSGSNTNTFSFITSLTPFIKLKAFNLSSTF
KILENPLKPKNQSLSPLHLVLEHELNQNSWYNHNKAPSFINDIQDMFFATTYALPNEKWVLVLRLHASACDRTTAVSLLQELVVLVSEEEKGALQKEIAN
EEEVTSSIEDLVPNKKAKKGLWERGIDMLGYSVNSLRLTNLKFKDSKSPRSSQVVRLQMNQKDTEKIIAGCRSRGIKLCGALASAGLIAAHKSKSRVDKQ
RKYAVVTLTDCRSVLDPTLSNHHFGFYHSAILNAHVMKGGEKLWELAQKTYAAFASYKNCNRHFSDMADLNFLMCKAIDNPGLTPSSSLRTALVSVFEDS
VVDDHAALQKEVGVEDYMGCASAHGIGPSIAIFDTIRDGRLDCVCVYPSPLHSREQMQEFIDSMKSVLVEGCNHV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G52610 unknown protein Potri.016G078000
[exp]
0 1
AT5G11320 YUC4 YUCCA4, Flavin-binding monooxy... Potri.018G033200
[exp]
8.77 0.9763
AT5G35110 unknown protein Potri.018G113901
[exp]
8.94 0.9855
AT1G29670 GDSL-like Lipase/Acylhydrolase... Potri.019G008406
[exp]
14.35 0.9850
AT5G45950 GDSL-like Lipase/Acylhydrolase... Potri.004G051900
[exp]
16.97 0.9847
AT2G27550 ATC centroradialis (.1) Potri.004G203900
[exp]
21.21 0.8917 TFL1.2
AT5G11130 Exostosin family protein (.1) Potri.018G025200
[exp]
22.02 0.9831
AT3G14880 unknown protein Potri.001G390100
[exp]
22.09 0.8808
AT3G60510 ATP-dependent caseinolytic (Cl... Potri.001G156900
[exp]
23.62 0.9831
AT4G37070 AtPLAIVA, PLP1,... phospholipase A IVA, Acyl tran... Potri.007G042200
[exp]
26.19 0.9828
AT5G41040 HXXXD-type acyl-transferase fa... Potri.014G166600
[exp]
28.84 0.9827 HCQL4

Potri.016G078000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.