Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22400 481 / 2e-167 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) AT3G11490 448 / 5e-155 rac GTPase activating protein (.1) AT1G08340 388 / 6e-133 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) AT2G46710 387 / 1e-130 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) AT4G03100 377 / 3e-127 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G211200 [exp] 794 / 0 AT5G22400 461 / 2e-159 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.009G162900 [exp] 510 / 1e-178 AT5G22400 457 / 3e-158 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.004G201600 [exp] 506 / 3e-177 AT5G22400 429 / 3e-147 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.002G176800 [exp] 396 / 1e-133 AT2G46710 477 / 3e-166 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.014G135570 [exp] 395 / 1e-133 AT4G03100 500 / 6e-176 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.014G103600 [exp] 382 / 3e-128 AT2G46710 478 / 2e-166 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022700 [exp] 596 / 0 AT5G22400 459 / 6e-159 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10014213 [exp] 580 / 0 AT5G22400 462 / 4e-160 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10030213 [exp] 402 / 5e-136 AT2G46710 440 / 1e-151 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10005998 [exp] 400 / 2e-135 AT2G46710 460 / 8e-160 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10024768 [exp] 375 / 1e-126 AT4G03100 475 / 6e-167 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10009778 [exp] 374 / 9e-126 AT4G03100 456 / 7e-159 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10020625 [exp] 360 / 6e-121 AT5G22400 362 / 4e-122 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10004864 [exp] 304 / 8e-99 AT5G22400 326 / 6e-108 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0409 [poplar] [flax] GAP PF00620 [poplar] [flax] RhoGAP RhoGAP domain CL0409 [poplar] [flax] PF00786 [poplar] [flax] PBD P21-Rho-binding domain
Representative CDS sequence Show only first row Show all	>Potri.016G078200.1 pacid=42809888 polypeptide=Potri.016G078200.1.p locus=Potri.016G078200 ID=Potri.016G078200.1.v4.1 annot-version=v4.1 ATGACTGAAGTACTCCAATCATCCCCTTCTCATCACTTCCCTTCTCCTTCAAGCTCCACCTCTACACCATGTGTTGTCAGCACCAATGATGTTGACATCC CACACCAGCACCAACCACAGCACCGTCCTCATAATAGACCCCATGAAATATTAGACCAAGAAGAAGAGAGCAAAGAGAGGGAGAGAGAAGGGGATCAAGT GTCAATCGTGGAACTTCTGGTTGCTGCTTTTAGGAGGTCTATTGTTGGGTGTAGTGTTACTGCTAGTACTGGGAGCAAAGACCTTTGCAGAATGGAGATT GGGGTGCCAACTAATGTTAGGCATGTTGCTCATGTTACTTTTGATAGGTTTAATGGGTTTCTTGGTTTGCCTGTTGAGTTTGAGCCTGAGGTTCCCAGGA GAGCCCCCAGTGCGAGTGCAACTGTTTTTGGGGTTTCAACAGAGTCCATGCAGCTTTCATATGACTCTAGAGGAAATAGCGTGCCTACAATACTCTTGAT GATGCAGAGACAGTTGTATGCCCAAGGAGGTTTGCAGGCAGAAGGAATTTTCAGAATTACTGCAGGTAACAGCCAGGAGGAGTATGTCAGGGACCAATTA AACAAGGGAGTGATCCCAGAGGGCATTGATGTGCACTGCTTGGCAGGCCTTATAAAGGCATGGTTTAGAGAACTTCCAACCGGTGTCCTGGACTCTCTGT CACCAGAGCAGGTAATGCAATGTCAGTCAGAAGAGGAGTGTGCTCAGCTTGCAAGGCTCCTTCCCCCTACAGAAGCTGCTTTACTTGACTGGGCAATAAA CCTGATGGCTGATGTTGCGCAAATGGAACATCTGAACAAGATGAATGCACGCAATGTTGCTATGGTGTTTGCACCAAACATGACTCAAATGTCTGATCCT TTAACAGCTTTGATGTACGCTGTTCAAGTGATGAATTTTCTCAAGAATCTTATAATTAGGACACTTAGAGAAAGAGAAGATTCTGTGATAGAATCAGCTC CAGCTTCCCGCCTTGAGCCTACTGATGAAAATGGGCACCAAAACGCTTCCCAGCCATCTTGTGAGGAGGATGAAGATGCCACTGAGGAGAATGAATGGGA GAAGTCATTTGTTGCTGGAGAGCCTGCTCTCGAGAGCCCTTCTCAACCTATTCAAGATGATTCCAATTCCGTGGATGGATCTGCTAGTTTCTTAAGTTCT ATTGAGAACATTCCTGTAGGAAAGCGATCTCTGGTTGATAATTGTCCTTGTGAAGTAGCATCTCAAGTGAATGCCTTTAAAAATGAACACCATGAGGGTG GCCTTACATATAAAACTGGAGGGGTCCAAGCAAAAAGTTGCAAGAGCCAAACTGGTCAATCGAGTACTTCATATTTCAAAAGAGGGAAGGTGAAGGAGCA GCCAATAGTTAGAGCTGCTGGGCCTATAGAGAAGGGCAAGGGAACTGGCATCGTAGGTCGCATAAATCCAAAGACAGAACTATTTGAAGCTTGGCGCTGA
AA sequence Show only first row Show all	>Potri.016G078200.1 pacid=42809888 polypeptide=Potri.016G078200.1.p locus=Potri.016G078200 ID=Potri.016G078200.1.v4.1 annot-version=v4.1 MTEVLQSSPSHHFPSPSSSTSTPCVVSTNDVDIPHQHQPQHRPHNRPHEILDQEEESKEREREGDQVSIVELLVAAFRRSIVGCSVTASTGSKDLCRMEI GVPTNVRHVAHVTFDRFNGFLGLPVEFEPEVPRRAPSASATVFGVSTESMQLSYDSRGNSVPTILLMMQRQLYAQGGLQAEGIFRITAGNSQEEYVRDQL NKGVIPEGIDVHCLAGLIKAWFRELPTGVLDSLSPEQVMQCQSEEECAQLARLLPPTEAALLDWAINLMADVAQMEHLNKMNARNVAMVFAPNMTQMSDP LTALMYAVQVMNFLKNLIIRTLREREDSVIESAPASRLEPTDENGHQNASQPSCEEDEDATEENEWEKSFVAGEPALESPSQPIQDDSNSVDGSASFLSS IENIPVGKRSLVDNCPCEVASQVNAFKNEHHEGGLTYKTGGVQAKSCKSQTGQSSTSYFKRGKVKEQPIVRAAGPIEKGKGTGIVGRINPKTELFEAWR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22400			Rho GTPase activating protein ...		Potri.016G078200 [exp]	0	1
AT1G24120		ARL1	ARG1-like 1 (.1)		Potri.010G036200 [exp]	6.78	0.8159
AT4G31860			Protein phosphatase 2C family ...		Potri.003G183800 [exp]	9.74	0.7330
AT2G25910			3'-5' exonuclease domain-conta...		Potri.018G058900 [exp]	10.81	0.7468
AT5G22400			Rho GTPase activating protein ...		Potri.006G211200 [exp]	11.04	0.8016
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Potri.009G034700 [exp]	12.72	0.7892
AT1G68490			unknown protein		Potri.012G056500 [exp]	15.16	0.7266
AT2G32800		AP4.3A	protein kinase family protein ...		Potri.017G055000 [exp]	16.97	0.7603
AT5G40250			RING/U-box superfamily protein...		Potri.017G072300 [exp]	17.17	0.6776
AT5G56340		ATCRT1	RING/U-box superfamily protein...		Potri.003G223200 [exp]	17.32	0.6856
AT2G21180			unknown protein		Potri.004G167700 [exp]	20.00	0.7322

Compare expression of checked genes

Potri.016G078200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.