Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SAD
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37970 482 / 1e-171 ATCAD6 cinnamyl alcohol dehydrogenase 6 (.1) AT4G39330 474 / 2e-168 AtCAD1, ATCAD9 cinnamyl alcohol dehydrogenase 9 (.1.2) AT4G37990 456 / 3e-161 CAD-B2, ATCAD8, ELI3-2 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) AT4G37980 450 / 3e-159 ELI3-1, ATCAD7 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) AT2G21730 425 / 8e-149 CAD2, ATCAD2 cinnamyl alcohol dehydrogenase homolog 2 (.1) AT2G21890 420 / 7e-147 CAD3, ATCAD3 cinnamyl alcohol dehydrogenase homolog 3 (.1) AT3G19450 335 / 1e-113 CAD-C, ATCAD4 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT4G34230 307 / 6e-103 CAD-5, ATCAD5, CAD-D, CAD6 cinnamyl alcohol dehydrogenase 5 (.1.2) AT1G72680 299 / 1e-99 ATCAD1 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) AT5G63620 72 / 1e-13 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G065300 [exp] 538 / 0 AT4G37990 492 / 1e-175 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Potri.006G199100 [exp] 534 / 0 AT4G37980 506 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Potri.009G063400 [exp] 511 / 0 AT4G37980 490 / 1e-174 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Potri.001G268600 [exp] 509 / 0 AT4G37980 480 / 7e-171 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Potri.001G307200 [exp] 478 / 4e-170 AT4G39330 572 / 0.0 cinnamyl alcohol dehydrogenase 9 (.1.2) Potri.001G372400 [exp] 429 / 2e-150 AT4G39330 439 / 2e-154 cinnamyl alcohol dehydrogenase 9 (.1.2) Potri.002G018300 [exp] 379 / 6e-131 AT4G39330 409 / 5e-143 cinnamyl alcohol dehydrogenase 9 (.1.2) Potri.009G063300 [exp] 370 / 3e-129 AT4G37990 283 / 2e-95 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Potri.009G095800 [exp] 332 / 1e-112 AT3G19450 476 / 3e-169 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035956 [exp] 516 / 0 AT4G37990 509 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Lus10025706 [exp] 511 / 0 AT4G37990 509 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Lus10023268 [exp] 467 / 9e-166 AT4G37980 471 / 1e-167 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Lus10002089 [exp] 447 / 8e-158 AT4G39330 577 / 0.0 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10017285 [exp] 387 / 5e-134 AT4G39330 413 / 1e-144 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10005611 [exp] 375 / 2e-129 AT4G39330 409 / 9e-143 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10003854 [exp] 366 / 1e-126 AT4G39330 486 / 2e-174 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10002812 [exp] 343 / 7e-117 AT3G19450 523 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10027864 [exp] 342 / 2e-116 AT3G19450 519 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10019811 [exp] 337 / 1e-114 AT3G19450 531 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00107 [poplar] [flax] ADH_zinc_N Zinc-binding dehydrogenase CL0296 [poplar] [flax] GroES PF08240 [poplar] [flax] ADH_N Alcohol dehydrogenase GroES-like domain
Representative CDS sequence Show only first row Show all	>Potri.016G078300.1 pacid=42809001 polypeptide=Potri.016G078300.1.p locus=Potri.016G078300 ID=Potri.016G078300.1.v4.1 annot-version=v4.1 ATGTCCAAGTCACCAGAAGAAGAACACCCCGTGAAGGCCTTCGGGTGGGCTGCTAGGGATCAATCTGGTCATCTTTCTCCCTTCAACTTCTCCAGGAGGG CTACTGGTGAAGAGGATGTGAGGTTCAAGGTGCTATACTGCGGGATATGCCATTCTGACCTTCACAGTATCAAGAATGACTGGGGCTTCTCCATGTACCC TTTGGTTCCTGGGCATGAAATTGTGGGGGAAGTGACAGAAGTTGGGAGCAAGGTGAAAAAGGTTAATGTAGGAGACAAAGTAGGCGTGGGATGCTTGGTT GGTGCATGTCACTCCTGTGAGAGTTGTGCCAGTGATCTTGAAAATTATTGTCCAAAAATGATCCTGACATACGCCTCCATCTACCATGATGGAACCATCA CTTACGGTGGCTACTCAGATCACATGGTCGCTAACGAACGCTACATCATTCGATTCCCCGATAACATGCCGCTTGACGGTGGCGCTCCTCTCCTTTGTGC CGGGATTACAGTGTATAGTCCCTTGAAATATTTTGGACTTGATGAACCCGGCAAGCATATCGGTATCGTTGGCTTAGGTGGACTTGGTCACGTGGCTGTC AAATTTGCCAAGGCCTTTGGGTCTAAAGTGACAGTAATTAGTACCTCCCCTTCTAAGAAGGAGGAGGCTTTGAAGAATTTAGGTGCAGACTCATTTTTGG TTAGTCGTGACCAAGAGCAAATGCAGGCTGCTGCAGGAACATTAGATGGCATCATCGATACAGTTTCTGCAGTTCACCCCCTTTTGCCATTGTTTGGATT GTTGAAGTCTCATGGGAAGCTTATCTTGGTGGGTGCACCAGAAAAGCCTCTTGAGCTACCTGCCTTTTCTTTGATTGCTGGAAGGAAGACAGTTGCCGGG AGTGGTATTGGAGGCATGAAGGAGACACAAGAGATGATTGATTTTGCAGCAAAACACAACATCACAGCAGATATCGAAGTTATTTCAACGGACTATCTTA ATACGGCAATGGAACGTTTGGCTAAAAACGATGTCAGATACCGATTTGTCATTGACGTTGGCAATACTTTGGCAGCTACGAAGCCCTAA
AA sequence Show only first row Show all	>Potri.016G078300.1 pacid=42809001 polypeptide=Potri.016G078300.1.p locus=Potri.016G078300 ID=Potri.016G078300.1.v4.1 annot-version=v4.1 MSKSPEEEHPVKAFGWAARDQSGHLSPFNFSRRATGEEDVRFKVLYCGICHSDLHSIKNDWGFSMYPLVPGHEIVGEVTEVGSKVKKVNVGDKVGVGCLV GACHSCESCASDLENYCPKMILTYASIYHDGTITYGGYSDHMVANERYIIRFPDNMPLDGGAPLLCAGITVYSPLKYFGLDEPGKHIGIVGLGGLGHVAV KFAKAFGSKVTVISTSPSKKEEALKNLGADSFLVSRDQEQMQAAAGTLDGIIDTVSAVHPLLPLFGLLKSHGKLILVGAPEKPLELPAFSLIAGRKTVAG SGIGGMKETQEMIDFAAKHNITADIEVISTDYLNTAMERLAKNDVRYRFVIDVGNTLAATKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37970		ATCAD6	cinnamyl alcohol dehydrogenase...		Potri.016G078300 [exp]	0	1	SAD
AT1G32170		XTH30, XTR4	xyloglucan endotransglycosylas...		Potri.001G136100 [exp]	3.16	0.7904	XTR4.2
AT5G60760			P-loop containing nucleoside t...		Potri.009G009200 [exp]	10.19	0.7734
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Potri.010G070800 [exp]	17.54	0.7575
AT5G11000			Plant protein of unknown funct...		Potri.006G261300 [exp]	20.39	0.6635
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Potri.008G192500 [exp]	20.49	0.7404	ALPHA.9
AT1G27700			Syntaxin/t-SNARE family protei...		Potri.014G019100 [exp]	20.73	0.7693
AT4G18930			RNA ligase/cyclic nucleotide p...		Potri.017G062400 [exp]	24.43	0.7750
AT2G14110			Haloacid dehalogenase-like hyd...		Potri.017G043900 [exp]	35.41	0.7205
AT1G74470			Pyridine nucleotide-disulphide...		Potri.009G157700 [exp]	45.89	0.7285
AT5G40760		G6PD6	glucose-6-phosphate dehydrogen...		Potri.001G337400 [exp]	51.53	0.6694	ACG12.1

Compare expression of checked genes

Potri.016G078300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.