Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03940 928 / 0 SRP54CP, CPSRP54, FFC SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, 54 CHLOROPLAST PROTEIN, chloroplast signal recognition particle 54 kDa subunit (.1) AT1G48900 221 / 4e-65 Signal recognition particle, SRP54 subunit protein (.1.2) AT1G15310 192 / 1e-54 SRP54-1, ATHSRP54A signal recognition particle 54 kDa subunit (.1) AT5G49500 189 / 2e-53 Signal recognition particle, SRP54 subunit protein (.1) AT2G45770 155 / 3e-42 FRD4, CPFTSY FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2) AT4G30600 105 / 1e-23 signal recognition particle receptor alpha subunit family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G211500 [exp] 1033 / 0 AT5G03940 859 / 0.0 SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, 54 CHLOROPLAST PROTEIN, chloroplast signal recognition particle 54 kDa subunit (.1) Potri.001G253500 [exp] 216 / 2e-63 AT1G48900 882 / 0.0 Signal recognition particle, SRP54 subunit protein (.1.2) Potri.016G112800 [exp] 209 / 1e-60 AT1G48900 887 / 0.0 Signal recognition particle, SRP54 subunit protein (.1.2) Potri.014G078800 [exp] 148 / 2e-39 AT2G45770 593 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2) Potri.006G183600 [exp] 107 / 3e-24 AT4G30600 869 / 0.0 signal recognition particle receptor alpha subunit family protein (.1) Potri.018G105900 [exp] 106 / 7e-24 AT4G30600 856 / 0.0 signal recognition particle receptor alpha subunit family protein (.1) Potri.002G155400 [exp] 90 / 8e-21 AT2G45770 215 / 1e-69 FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2) Potri.009G047902 [exp] 91 / 2e-19 AT1G48900 487 / 7e-171 Signal recognition particle, SRP54 subunit protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021346 [exp] 929 / 0 AT5G03940 903 / 0.0 SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, 54 CHLOROPLAST PROTEIN, chloroplast signal recognition particle 54 kDa subunit (.1) Lus10017023 [exp] 914 / 0 AT5G03940 892 / 0.0 SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, 54 CHLOROPLAST PROTEIN, chloroplast signal recognition particle 54 kDa subunit (.1) Lus10016213 [exp] 203 / 3e-58 AT1G48900 890 / 0.0 Signal recognition particle, SRP54 subunit protein (.1.2) Lus10029330 [exp] 188 / 4e-53 AT1G48900 816 / 0.0 Signal recognition particle, SRP54 subunit protein (.1.2) Lus10041358 [exp] 151 / 2e-40 AT2G45770 583 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2) Lus10036570 [exp] 131 / 8e-33 AT2G45770 564 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2) Lus10017891 [exp] 114 / 2e-26 AT4G30600 933 / 0.0 signal recognition particle receptor alpha subunit family protein (.1) Lus10035066 [exp] 110 / 2e-25 AT4G30600 943 / 0.0 signal recognition particle receptor alpha subunit family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF01656 [poplar] [flax] CbiA CobQ/CobB/MinD/ParA nucleotide binding domain CL0023 [poplar] [flax] PF02881 [poplar] [flax] SRP54_N SRP54-type protein, helical bundle domain CL0123 [poplar] [flax] HTH PF02978 [poplar] [flax] SRP_SPB Signal peptide binding domain
Representative CDS sequence Show only first row Show all	>Potri.016G078600.1 pacid=42809900 polypeptide=Potri.016G078600.1.p locus=Potri.016G078600 ID=Potri.016G078600.1.v4.1 annot-version=v4.1 ATGGAGGCCGTACAGTTATCGACCGTTGCCTCCCGCCATTTCTCTACTCCTTCTCTCTCGAAAAACAACAAGACTCTCTCTTACTATTCAAGCTGTCCAG GATGTTCAACTAAATCTTTTTGTTCTTCGTGGACTGGCTCAAGCAATAATGTCACTTCGCTTTCCTCAAGAAATTCATTCACTAAAGAGATGTGGAGGTG GGTGACTTGCAAGAGTGTTGTTACTTTTAGAAGAGAAATGGGAGGTGGTGTGGTAAAAGCAGAAATGTTTGGTCAGTTAACTAGTGGTCTCGAATCTGCT TGGAACAAGCTCAAAGGAGAAGAGGTTTTGACCAAGGAGAATATTGTGGAGCCAATGAGGGATATTAGAAGAGCTCTACTGGAAGCTGATGTAAGCCTTC CTGTGGTTCGAAGGTTTGTTCAATCAGTCAGTGACCAAGCTGTTGGTGTTGGCCTGGTTAGAGGAGTGAAACCTGATCAGCAATTAGTCAAGATTGTGCA CGATGAGCTTGTGAAATTGATGGGTGGAGAGGTATCTGAATTGGTCTTTGCAAAATCTGCTCCCACTGTAATATTATTGGCTGGCCTACAAGGAGTTGGG AAGACAACTGTTTGTGCAAAGTTAGCTAATTACCTTAAGAAACAGGGGAAGTCTTGCATGCTTATTGCGGGAGATGTCTACAGACCTGCTGCCATTGATC AACTTGTTATTTTGGGTGAACAGGTAGGTGTGCCTGTTTATACAGAAGGAACTGATGTTAAACCTTCAGAAATAGCTAGGAAAGGTTTATCAGAGGCCAA AAAGAAGAACATAGATGTGGTCATAGTAGACACTGCTGGAAGGCTTCAGATAGACAAAGGGATGATGGATGAGCTGAAAGACGTTAAACTGATATTGAAT CCAACAGAAGTTTTGCTTGTTGTGGATGCAATGACTGGGCAAGAAGCTGCAGCTCTGGTTACAACATTCAATCTTGAAATTGGAATTACGGGTGCCATTT TGACCAAGCTAGATGGGGATTCTAGAGGTGGTGCAGCTCTTAGTGTCAAAGAGGTATCAGGAAAGCCAATCAAGCTTGTAGGACGGGGAGAGCGAATGGA GGATCTTGAACCTTTCTACCCCAATCGCATGGCTGGACGCATCTTAGGAATGGGAGATGTTCTGTCTTTTGTTGAGAAGGCTCAAGAAGTTATGCGCCAA GAAGATGCTGAAGAATTGCAGAAGAAGATTATGAGTGCCAATTTTGACTTCAATGATTTCCTAAAGCAAACTCGTGCTGTTGCTAAGATGGGTTCCATGA CTCGTGTCATAGGGATGATCCCAGGAATGGCCAAGGTTACTCCTGGACAAGTTCGAGAAGCAGAGAAGAATTTAAAGATAATGGAAGCAATGATTGAAGT GATGACTCCTGAGGAGAGAGAGAAGCCAGAATTGTTAGCAGAATCTCCTGAAAGGAGGAAAAGAGTTGCCCAGGCTTCTGGAAAGACAGAGCATCAGGTG AGCCAACTTGTTGCCCAACTCTTCCAAATGCGTGTTCGTATGAAGAACCTAATGGGTGTGATGGAGGGTGGATCTATTCCTTCCCTGAGCAATCTTGAGG ATGCACTAAAAACCGAACAGAAGGCTCCTCCCGGCACTGCAAGGAGGAGGAGAAAAACAGAATCAAGCAAGCGGTTTGTTGACTCAGTATCATCAAGGCC GGGTCCCCATGGTTTTGGGTCTAGCAATTAG
AA sequence Show only first row Show all	>Potri.016G078600.1 pacid=42809900 polypeptide=Potri.016G078600.1.p locus=Potri.016G078600 ID=Potri.016G078600.1.v4.1 annot-version=v4.1 MEAVQLSTVASRHFSTPSLSKNNKTLSYYSSCPGCSTKSFCSSWTGSSNNVTSLSSRNSFTKEMWRWVTCKSVVTFRREMGGGVVKAEMFGQLTSGLESA WNKLKGEEVLTKENIVEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVGVGLVRGVKPDQQLVKIVHDELVKLMGGEVSELVFAKSAPTVILLAGLQGVG KTTVCAKLANYLKKQGKSCMLIAGDVYRPAAIDQLVILGEQVGVPVYTEGTDVKPSEIARKGLSEAKKKNIDVVIVDTAGRLQIDKGMMDELKDVKLILN PTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPNRMAGRILGMGDVLSFVEKAQEVMRQ EDAEELQKKIMSANFDFNDFLKQTRAVAKMGSMTRVIGMIPGMAKVTPGQVREAEKNLKIMEAMIEVMTPEEREKPELLAESPERRKRVAQASGKTEHQV SQLVAQLFQMRVRMKNLMGVMEGGSIPSLSNLEDALKTEQKAPPGTARRRRKTESSKRFVDSVSSRPGPHGFGSSN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03940		SRP54CP, CPSRP5...	SIGNAL RECOGNITION PARTICLE 54...		Potri.016G078600 [exp]	0	1
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Potri.001G351400 [exp]	1.41	0.9648
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Potri.006G160300 [exp]	2.00	0.9606
					Potri.016G121650 [exp]	2.44	0.9605
AT2G40490		HEME2	Uroporphyrinogen decarboxylase...		Potri.019G048900 [exp]	4.24	0.9581
AT4G01050		TROL	thylakoid rhodanese-like (.1)		Potri.014G096500 [exp]	4.69	0.9442
AT1G08520		V157, ALB1, ALB...	PIGMENT DEFECTIVE EMBRYO 166, ...		Potri.009G049400 [exp]	7.14	0.9399	CHLD.1
AT3G56630		CYP94D2	"cytochrome P450, family 94, s...		Potri.001G277305 [exp]	8.48	0.9437
AT5G24930	CO	COL4, ATCOL4	CONSTANS-like 4 (.1)		Potri.018G013800 [exp]	8.77	0.9123	Pt-COL1.2
AT2G44920			Tetratricopeptide repeat (TPR)...		Potri.010G200000 [exp]	9.79	0.9400
AT4G17740			Peptidase S41 family protein (...		Potri.008G173900 [exp]	11.31	0.9561

Compare expression of checked genes

Potri.016G078600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.