Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52660 449 / 3e-155 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G00830 374 / 4e-125 LIF2 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT5G28390 160 / 6e-47 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G44710 137 / 2e-34 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G34110 87 / 6e-18 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT1G71770 82 / 3e-16 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2) AT1G49760 81 / 7e-16 PABP8, PAB8 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) AT2G23350 80 / 1e-15 PABP4, PAB4 poly(A) binding protein 4 (.1) AT3G16380 77 / 5e-15 PAB6 poly(A) binding protein 6 (.1) AT2G36660 72 / 3e-13 PAB7 poly(A) binding protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G212400 [exp] 642 / 0 AT3G52660 473 / 1e-164 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.009G163400 [exp] 464 / 9e-161 AT3G52660 400 / 9e-136 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.004G201900 [exp] 463 / 3e-160 AT3G52660 422 / 2e-144 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G104500 [exp] 385 / 6e-130 AT4G00830 574 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Potri.002G178200 [exp] 382 / 1e-128 AT4G00830 558 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Potri.005G116400 [exp] 152 / 2e-39 AT2G44710 325 / 1e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G139700 [exp] 149 / 2e-38 AT2G44710 585 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G051500 [exp] 145 / 3e-37 AT2G44710 627 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.007G014100 [exp] 144 / 1e-36 AT2G44710 322 / 8e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021351 [exp] 523 / 0 AT3G52660 478 / 3e-166 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10034195 [exp] 436 / 3e-150 AT3G52660 444 / 7e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043390 [exp] 435 / 6e-150 AT3G52660 444 / 7e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10030207 [exp] 374 / 1e-125 AT4G00830 601 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Lus10002689 [exp] 372 / 1e-124 AT4G00830 591 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Lus10017026 [exp] 229 / 3e-70 AT3G52660 320 / 2e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10028162 [exp] 142 / 5e-36 AT2G44710 675 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10033990 [exp] 137 / 3e-34 AT2G44710 301 / 2e-88 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10012785 [exp] 131 / 2e-32 AT2G44710 305 / 4e-92 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10002835 [exp] 87 / 7e-18 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.016G079200.3 pacid=42810492 polypeptide=Potri.016G079200.3.p locus=Potri.016G079200 ID=Potri.016G079200.3.v4.1 annot-version=v4.1 ATGCCAAGATCAGGGGGAAGTGGTGCATCTGCTGATGAACCAGATATCCCTGAAAAGTCTGTCAAGCCTGAAGAGCAGGTTGACCTTGATGGTGACAATG AAGCTGAGGAGACAATGGAAGAAGAAGTTGAGTATGAAGAAGTAGAAGAGGAGGAGGAAGTGGAAGAGATAGAGGAAGAGGTTGAAGAGGAGGTAGAAGA GGAAGAAATTGAAGAGGCTGCTGATGAAGCAGATTCGAAAAAGGGCTCAGACGGTGAAGAGGAGATAGATGAGCAAAGAAAACATGCTGAGCTTCTTGCA CTTCCTCCTCATGGATCAGAGGTGTATCTTGGTGGCATTCCTCCTGATGCTTCTGAAGGGGATTTGAAGGAATTCTGTGAATCTATAGGAGAAGTAACAG AGGTAAGGATAATGAAGGGAAAAGATTCAAGCGAGTCAAAGGGTTATGCTTTTGTGTCTTTCAGAACAAAGGAATTGGCTTCCAAGGCCATTGAAGAGTT GAACAATACTGAGTTTAAGGGTAAAAAGGTAAAGTGTTCAACATCTCAAGCAAATCATAGACTGTTTATTGGCAATGTCCCAAGAAACTGGGGAGAAGAA AATATGAAGAAGGCTGTAAAAAAGATTGGGCCTGGAGTCAATTCGGTGGAATTGTTGAAGGACCCACAGAACCCGAGCCGGAATCGGGGATTTGCATTCA TTGAGTATTATAATCATGCATGTGCAGAATACTCAAGAAAAAAGATGTCAAACCCAGAATTTAAACTTGATGATAATGCTCCTACTGTGAGCTGGGCAGA TCCTAAAAATGCAGGATCTTCTGCTGCATCTCAGGTCAAGGCAGTATATGTCAAGAATTTACCTGAAGATATTACTCAGGATGGTCTAAGGCAGCTGTTT GAGCATCACGGAAAAGTCACAAAAGTAGTTCTTCCACCTGCAAAACCAGGACATGAAAAGAGCAGATTTGGTTTTGTGCACTTTGCAGAGAGGTCAAGTG CCATGAAGGCATTGAAGAACACTGAGAAATATGAAATTGATGGTCACGTTTTGGATTGTTCCCTTGCAAAACCTCATACTGATCAGAAGCCTTCTGGAGG GCCAAATTCACAGAATTCATCCTTGTACTCAAACTTTCCACCTCAACTTGGCTACGGTTTAGCTGGGGGTACATATGGTGGTTTCGGTGCAGGCTTTGGC GGTGCAGGCTTTGGCGCTGCTGGCTTTACACAACCTGTCATCTATGGCAGGGGACCGACTCCTGCTGGCATGGCAATGATGCCTATGCTTTTGCCTGACG GAAGGATTGGATATGTCCTCCAACAGCCTGGAATGCAAGCACACAGCTCTCCGCAGCCACAGGGTGGCAGGGGTCGTGGTGCTGGCAGCTCGAGTGGTGG AAGACGTGGTAATGACCGTGGACGCAGCCGATACAACCCATACTGA
AA sequence Show only first row Show all	>Potri.016G079200.3 pacid=42810492 polypeptide=Potri.016G079200.3.p locus=Potri.016G079200 ID=Potri.016G079200.3.v4.1 annot-version=v4.1 MPRSGGSGASADEPDIPEKSVKPEEQVDLDGDNEAEETMEEEVEYEEVEEEEEVEEIEEEVEEEVEEEEIEEAADEADSKKGSDGEEEIDEQRKHAELLA LPPHGSEVYLGGIPPDASEGDLKEFCESIGEVTEVRIMKGKDSSESKGYAFVSFRTKELASKAIEELNNTEFKGKKVKCSTSQANHRLFIGNVPRNWGEE NMKKAVKKIGPGVNSVELLKDPQNPSRNRGFAFIEYYNHACAEYSRKKMSNPEFKLDDNAPTVSWADPKNAGSSAASQVKAVYVKNLPEDITQDGLRQLF EHHGKVTKVVLPPAKPGHEKSRFGFVHFAERSSAMKALKNTEKYEIDGHVLDCSLAKPHTDQKPSGGPNSQNSSLYSNFPPQLGYGLAGGTYGGFGAGFG GAGFGAAGFTQPVIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGMQAHSSPQPQGGRGRGAGSSSGGRRGNDRGRSRYNPY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Potri.016G079200 [exp]	0	1
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Potri.006G212400 [exp]	4.24	0.8090
AT5G15270			RNA-binding KH domain-containi...		Potri.010G167100 [exp]	4.24	0.7996
					Potri.014G023301 [exp]	4.24	0.8309
AT1G25540		MED25, PFT1	PHYTOCHROME AND FLOWERING TIME...		Potri.010G128600 [exp]	5.56	0.7860	PFT1.1
AT1G11420		ATDUF2	DOMAIN OF UNKNOWN FUNCTION 724...		Potri.014G117800 [exp]	6.70	0.8008
AT1G79030			Chaperone DnaJ-domain superfam...		Potri.001G438300 [exp]	13.26	0.8077
AT5G17510			unknown protein		Potri.019G042800 [exp]	13.41	0.7826
AT4G00335		RHB1A	RING-H2 finger B1A (.1.2.3)		Potri.002G161500 [exp]	15.90	0.7923
AT2G26280		CID7	CTC-interacting domain 7 (.1)		Potri.018G047700 [exp]	23.32	0.7471
AT4G19160			unknown protein		Potri.001G193400 [exp]	27.11	0.8238

Compare expression of checked genes

Potri.016G079200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.