Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G57790 313 / 4e-105 F-box family protein (.1) AT3G56470 290 / 9e-96 F-box family protein (.1) AT4G00893 280 / 1e-91 unknown protein AT4G12370 253 / 2e-82 unknown protein AT4G10660 246 / 2e-79 CDC68-related (.1) AT1G49360 202 / 3e-60 F-box family protein (.1) AT3G18720 189 / 1e-56 F-box family protein (.1) AT4G10695 181 / 4e-55 CDC68-related (.1) AT4G12382 139 / 5e-40 F-box family protein (.1.2) AT2G44735 105 / 2e-25 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G212600 [exp] 702 / 0 AT1G57790 294 / 2e-97 F-box family protein (.1) Potri.012G106800 [exp] 93 / 1e-20 AT1G57790 99 / 6e-23 F-box family protein (.1) Potri.004G134900 [exp] 64 / 3e-11 AT4G17565 99 / 8e-23 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.002G015700 [exp] 58 / 3e-09 AT5G60060 63 / 5e-11 Protein of unknown function (DUF295) (.1) Potri.012G106750 [exp] 45 / 5e-05 AT1G57790 57 / 7e-09 F-box family protein (.1) Potri.006G015601 [exp] 45 / 5e-05 AT4G22660 59 / 3e-09 F-box family protein with a domain of unknown function (DUF295) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021352 [exp] 613 / 0 AT1G57790 292 / 1e-96 F-box family protein (.1) Lus10017027 [exp] 609 / 0 AT1G57790 286 / 6e-93 F-box family protein (.1) Lus10022706 [exp] 537 / 0 AT1G57790 293 / 3e-97 F-box family protein (.1) Lus10014208 [exp] 534 / 0 AT1G57790 286 / 2e-94 F-box family protein (.1) Lus10019204 [exp] 87 / 7e-19 AT1G57790 79 / 2e-16 F-box family protein (.1) Lus10024904 [exp] 85 / 2e-17 AT1G57790 97 / 2e-21 F-box family protein (.1) Lus10004476 [exp] 81 / 2e-16 AT1G57790 92 / 4e-20 F-box family protein (.1) Lus10029943 [exp] 78 / 2e-15 AT1G57790 81 / 4e-16 F-box family protein (.1) Lus10013738 [exp] 71 / 3e-13 AT1G57790 73 / 3e-14 F-box family protein (.1) Lus10029926 [exp] 59 / 5e-10 AT1G57790 72 / 4e-15 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Potri.016G079300.1 pacid=42810004 polypeptide=Potri.016G079300.1.p locus=Potri.016G079300 ID=Potri.016G079300.1.v4.1 annot-version=v4.1 ATGGGTGGTAGAAAGAGAAGGAAAGTGAAATTGTTATCTGCGAGGGTGGTGGATGATAAAAGAAGAACAACAATGAATAAGAAAGCAATGTTGGAAATGC AAACTTGGTCTGATCTTCCCATAGAACTTCTGGAACTGATATTCTGTCGCTTGTCGCTAGAGGATAATATCCGTTCCTCCATTGCTTGCAAGAGATGGAA CACTGCTGCCATTTCTGTTAGAGTGGTAAACCATTCACCCTGGCTTATGTATTTTCCAAAATTTGGTAACATGTATGAGTTCTACGATCCAGCTCAGCGC AAGACCTATTCTCTTGAGTTGCCAGAGTTGTATGGGTCGAGAGTTTGCTACACCAAAGATGGTTGGCTGTTGCTATACAGACCCAGAACAAACCGTGTGT TTTTCTTTAATCCTTTCTCTCGGGAAGTTGTCAAACTGCCAAGATTTGAATTGACTTATCAGATAGTTGCCTTCTCTTGTGCCCCAACATCTAACACCTG TGTAGTTTTTACAGTTAGGCACATCAGTCCCACAATTGTTGCAATCAGTACTTGTCATCCTGGGGCAACTGAGTGGGTTACTGTTAATTATCAAAATCGC TTGCCTTTTGTGAGTAGTATTTGGAACAAGATCGTTTTCTGCAATGGATTCTTCTACTGTCTAAGTCTCACTGGTTGGCTTGGTGTGTTTGACCCACTGG AGCATACTTGGAGTGTTCTTGCTGTGCCACCCCCTAAATGCCCTGAGAATTTTTTTGCAAAAAATTGGTGGAAGGGAAAGTTTATGTCTGAGCATAATGG AGACATTCTAGTTATTTATACATGCTGTAGTGAAAATCCCATAATATTTAAGTTGGATCAGTCAAAGATGTTCTGGCGAGAGATGAAAACCCTTGATGGT ATGACACTATTTGCCAGTTTCTTGTCATCTCATTCAAGAAGTGACCTCCCTGGCATGATGAGAAACAGCGTCTACTTCTCTAAAGTTCGTTTCTTTGGGA AACGCTGCATATCTTATTCTCTTGATGATTGTAGATACTATCCTCGTAAGCAGTGTCATGACTGGGGAGAGCAAGATCCTTTTGAGAATATCTGGATTGA ACCACCTGAGGACCTCTCATCCTTCATTTGA
AA sequence Show only first row Show all	>Potri.016G079300.1 pacid=42810004 polypeptide=Potri.016G079300.1.p locus=Potri.016G079300 ID=Potri.016G079300.1.v4.1 annot-version=v4.1 MGGRKRRKVKLLSARVVDDKRRTTMNKKAMLEMQTWSDLPIELLELIFCRLSLEDNIRSSIACKRWNTAAISVRVVNHSPWLMYFPKFGNMYEFYDPAQR KTYSLELPELYGSRVCYTKDGWLLLYRPRTNRVFFFNPFSREVVKLPRFELTYQIVAFSCAPTSNTCVVFTVRHISPTIVAISTCHPGATEWVTVNYQNR LPFVSSIWNKIVFCNGFFYCLSLTGWLGVFDPLEHTWSVLAVPPPKCPENFFAKNWWKGKFMSEHNGDILVIYTCCSENPIIFKLDQSKMFWREMKTLDG MTLFASFLSSHSRSDLPGMMRNSVYFSKVRFFGKRCISYSLDDCRYYPRKQCHDWGEQDPFENIWIEPPEDLSSFI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G57790			F-box family protein (.1)		Potri.016G079300 [exp]	0	1
AT4G39620		ATPPR5, EMB2453	EMBRYO DEFECTIVE 2453, A. THAL...		Potri.005G082400 [exp]	4.47	0.9354
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Potri.008G098700 [exp]	6.92	0.9308
AT1G03310		ATISA2, ISA2, D...	BRANCHING ENZYME 2, ARABIDOPSI...		Potri.002G219900 [exp]	8.71	0.9283
AT1G73400			Pentatricopeptide repeat (PPR)...		Potri.010G098600 [exp]	11.22	0.8954
AT5G64380			Inositol monophosphatase famil...		Potri.017G042900 [exp]	12.84	0.9218
AT3G07310			Protein of unknown function (D...		Potri.002G247700 [exp]	16.73	0.8854
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Potri.010G015200 [exp]	17.94	0.8526
AT2G46220			Uncharacterized conserved prot...		Potri.014G092200 [exp]	22.24	0.9070
AT2G13690			PRLI-interacting factor, putat...		Potri.007G109300 [exp]	24.97	0.8938
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.018G067500 [exp]	29.32	0.9063

Compare expression of checked genes

Potri.016G079300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.