Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03870 301 / 2e-99 Glutaredoxin family protein (.1) AT4G10630 147 / 8e-41 Glutaredoxin family protein (.1) AT5G06470 140 / 3e-39 Glutaredoxin family protein (.1) AT3G57070 135 / 1e-35 Glutaredoxin family protein (.1) AT5G01420 135 / 2e-35 Glutaredoxin family protein (.1) AT2G41330 130 / 5e-34 Glutaredoxin family protein (.1) AT5G13810 125 / 3e-33 Glutaredoxin family protein (.1) AT1G32760 125 / 2e-32 Glutaredoxin family protein (.1) AT1G64500 122 / 6e-31 Glutaredoxin family protein (.1) AT5G39865 118 / 1e-29 Glutaredoxin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G212700 [exp] 627 / 0 AT5G03870 332 / 2e-111 Glutaredoxin family protein (.1) Potri.001G448300 [exp] 156 / 4e-44 AT4G10630 285 / 6e-95 Glutaredoxin family protein (.1) Potri.010G243700 [exp] 155 / 3e-43 AT5G01420 213 / 3e-65 Glutaredoxin family protein (.1) Potri.006G201300 [exp] 150 / 2e-42 AT5G06470 213 / 1e-68 Glutaredoxin family protein (.1) Potri.008G016100 [exp] 152 / 1e-41 AT5G01420 209 / 2e-63 Glutaredoxin family protein (.1) Potri.006G041800 [exp] 145 / 2e-39 AT3G57070 340 / 3e-114 Glutaredoxin family protein (.1) Potri.016G067700 [exp] 142 / 3e-39 AT5G06470 206 / 4e-66 Glutaredoxin family protein (.1) Potri.003G141800 [exp] 144 / 4e-39 AT1G64500 315 / 8e-106 Glutaredoxin family protein (.1) Potri.T125406 [exp] 138 / 4e-38 AT5G13810 294 / 1e-100 Glutaredoxin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021353 [exp] 397 / 3e-136 AT5G03870 296 / 3e-97 Glutaredoxin family protein (.1) Lus10017029 [exp] 390 / 3e-133 AT5G03870 296 / 3e-97 Glutaredoxin family protein (.1) Lus10008270 [exp] 162 / 3e-46 AT4G10630 305 / 7e-103 Glutaredoxin family protein (.1) Lus10033238 [exp] 152 / 2e-42 AT4G10630 297 / 1e-99 Glutaredoxin family protein (.1) Lus10013597 [exp] 142 / 4e-40 AT5G06470 179 / 2e-56 Glutaredoxin family protein (.1) Lus10021255 [exp] 141 / 1e-39 AT5G06470 185 / 7e-59 Glutaredoxin family protein (.1) Lus10028742 [exp] 144 / 2e-39 AT5G01420 221 / 6e-69 Glutaredoxin family protein (.1) Lus10017547 [exp] 142 / 2e-38 AT5G01420 227 / 2e-71 Glutaredoxin family protein (.1) Lus10039537 [exp] 133 / 8e-36 AT5G13810 261 / 4e-87 Glutaredoxin family protein (.1) Lus10024164 [exp] 132 / 2e-35 AT5G13810 259 / 2e-86 Glutaredoxin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF00462 [poplar] [flax] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Potri.016G079400.1 pacid=42809073 polypeptide=Potri.016G079400.1.p locus=Potri.016G079400 ID=Potri.016G079400.1.v4.1 annot-version=v4.1 ATGGGATGTGTTTCTTCAAAACTCTTCAAGAAAGAACTCCATCAACAAATCATATTCAACAATGGCGGCCAGTGTGTTGACCACGTGGTCTCTCTCACTT CTTCAACTTATGGTGCTCTCAAACTTGACTGCAACAATCAACATCAACAACAACCACCACTACAACAAGCACACAAACAAGATCCCATCAAAGAAATTGT GGAAGAGAGTAAGAGATTGCAACAAATATCTCCAACAAAAGAAGATCCAGAGGTTGTTAACACTTGGGAGCTAATGGGAGATCTTGAAGAAGGAGTACCC GTTTCAAGTCAAACTAAGAGAAGTCCAAATTCGAGGGTTTTGCTTCGTGGGTTTGCTGATTTGGACCTTAGGAGTCCACTCAAATTCTTGAATCAAATTG GGTCTCCAAGAAAGGCGAAAACTTATGGTGGCAAAGAAAATAAGGTAAAGAGATCGTCAGATTTTAGCCCCAGACCGGTTTTAAAGGCCAACAATTCATC AGGGAATTCGTGCAAGGCAGTCTTGAGATTGAGTTATCCTGTGAAAGCGTCTCCAGTTGGGGCTAAAACAGAGAATCTTAGAAGAGAATCTGGATTCTCT CCGAGGAGGAAGAGTAGTTTTATTCCTCTGTTCGATCCAGAACTTGTTGCATTGTATGAGAAAGACTTGTCCGAAGAAGAAGAAGAAGAAATCGAGAGGA TAATTTTACCAAGTTCAAGAACCACAAAAGTAAAGAATTTGCGAGATTTGGAATCTATCCTTCAGTCTTTCGAACAAAAACGCCCGCCTGGAGGGGAAAA TAAGGTCGTGATTTACACTACTACATTGAGAGGAATTAGAAAAACATTTGAAGATTGCAACACCGTGAGATCAATTATTGAGTCACATCATATTCATATT GTTGAAAGAGACGTTTCCATGGATTCGGGCTTTAAGGAAGAGTTAAGAGGGCTAATGGGTACGAATGAAGTCAAAGTTCCACTTGTGTTTGTTAAAGGGA GGTTGATTGGCGGTGCTGACCAAGTGGTAAAGTTGGAGGTGGAGGGAAAGTTGGAGATTCTGTTTGATGGAATCCCGAAAGGGCTCGCTGGAGGATGTGA AGGGTGTGCTGGGGTTAGGTTTGTGATGTGTGTGGAGTGTAATGGGAGCTGCAAGGTTTTGCACGAGGAGCAGAAGAAGATGGTTAGATGTGGTGAGTGC AATGAGAATGGGCTGATGCAATGCCCCATCTGTTGCTGA
AA sequence Show only first row Show all	>Potri.016G079400.1 pacid=42809073 polypeptide=Potri.016G079400.1.p locus=Potri.016G079400 ID=Potri.016G079400.1.v4.1 annot-version=v4.1 MGCVSSKLFKKELHQQIIFNNGGQCVDHVVSLTSSTYGALKLDCNNQHQQQPPLQQAHKQDPIKEIVEESKRLQQISPTKEDPEVVNTWELMGDLEEGVP VSSQTKRSPNSRVLLRGFADLDLRSPLKFLNQIGSPRKAKTYGGKENKVKRSSDFSPRPVLKANNSSGNSCKAVLRLSYPVKASPVGAKTENLRRESGFS PRRKSSFIPLFDPELVALYEKDLSEEEEEEIERIILPSSRTTKVKNLRDLESILQSFEQKRPPGGENKVVIYTTTLRGIRKTFEDCNTVRSIIESHHIHI VERDVSMDSGFKEELRGLMGTNEVKVPLVFVKGRLIGGADQVVKLEVEGKLEILFDGIPKGLAGGCEGCAGVRFVMCVECNGSCKVLHEEQKKMVRCGEC NENGLMQCPICC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03870			Glutaredoxin family protein (....		Potri.016G079400 [exp]	0	1
AT5G50890			alpha/beta-Hydrolases superfam...		Potri.005G204100 [exp]	5.47	0.6715
AT1G12640			MBOAT (membrane bound O-acyl t...		Potri.003G121700 [exp]	10.95	0.6653
AT3G16460		JAL34	jacalin-related lectin 34, Man...		Potri.017G010900 [exp]	12.12	0.6474
AT2G24420			DNA repair ATPase-related (.1....		Potri.018G003700 [exp]	30.98	0.6087
AT4G17520			Hyaluronan / mRNA binding fami...		Potri.003G081600 [exp]	35.83	0.6539
AT1G26340		B5 #6, B5#6, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.010G156900 [exp]	38.26	0.6343	B5.2
AT4G39280			phenylalanyl-tRNA synthetase, ...		Potri.004G155000 [exp]	43.47	0.5973
AT1G19920		ASA1, APS2	ATP SULFURYLASE ARABIDOPSIS 1,...		Potri.002G024200 [exp]	43.68	0.6340
AT5G54880			DTW domain-containing protein ...		Potri.001G423900 [exp]	45.16	0.6116
AT3G09630			Ribosomal protein L4/L1 family...		Potri.006G132450 [exp]	53.29	0.6318

Compare expression of checked genes

Potri.016G079400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.