Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	AFC1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53570 730 / 0 AME2, AFC1 FUS3-complementing gene 1 (.1.2.3.4) AT4G24740 642 / 0 AME1, AFC2 FUS3-complementing gene 2 (.1.2) AT4G32660 531 / 0 AME3 Protein kinase superfamily protein (.1.2.3) AT5G35980 172 / 7e-47 YAK1 yeast YAK1-related gene 1 (.1.2) AT1G13350 172 / 9e-47 Protein kinase superfamily protein (.1.2) AT3G53640 164 / 2e-44 Protein kinase superfamily protein (.1) AT3G25840 160 / 7e-43 Protein kinase superfamily protein (.1.2) AT2G17530 155 / 2e-42 Protein kinase superfamily protein (.1.2.3) AT3G17750 159 / 6e-42 Protein kinase superfamily protein (.1) AT1G73460 157 / 2e-41 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G213400 [exp] 796 / 0 AT3G53570 720 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Potri.015G085700 [exp] 652 / 0 AT4G24740 747 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.012G089700 [exp] 651 / 0 AT4G24740 744 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.010G049100 [exp] 623 / 0 AT4G24740 642 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.006G244400 [exp] 569 / 0 AT4G32660 634 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G075300 [exp] 171 / 2e-46 AT5G35980 1134 / 0.0 yeast YAK1-related gene 1 (.1.2) Potri.019G043400 [exp] 171 / 2e-46 AT5G35980 1088 / 0.0 yeast YAK1-related gene 1 (.1.2) Potri.010G126900 [exp] 169 / 1e-45 AT3G25840 727 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G188400 [exp] 166 / 9e-45 AT2G40120 576 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024431 [exp] 760 / 0 AT3G53570 732 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Lus10025301 [exp] 758 / 0 AT3G53570 726 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Lus10043309 [exp] 657 / 0 AT4G24740 730 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10019458 [exp] 654 / 0 AT4G24740 729 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10036878 [exp] 622 / 0 AT4G24740 662 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10006230 [exp] 264 / 1e-86 AT4G24740 276 / 8e-93 FUS3-complementing gene 2 (.1.2) Lus10027636 [exp] 187 / 1e-57 AT4G24740 187 / 6e-59 FUS3-complementing gene 2 (.1.2) Lus10009542 [exp] 168 / 5e-45 AT5G35980 1147 / 0.0 yeast YAK1-related gene 1 (.1.2) Lus10020366 [exp] 166 / 2e-44 AT5G35980 1159 / 0.0 yeast YAK1-related gene 1 (.1.2) Lus10031902 [exp] 162 / 3e-43 AT1G73450 1318 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.016G079900.1 pacid=42810134 polypeptide=Potri.016G079900.1.p locus=Potri.016G079900 ID=Potri.016G079900.1.v4.1 annot-version=v4.1 ATGGAGACGCAGAGAATAACAGAGTTTCCACATAAAAACATGGATAAGCGTCCTAGGAAACGACAGCGTTTAACATGGGACATACCTCCTCCTCCTCCTC CTTTCTTAGCTCCTGCGAAGGTGGTTCCAGGGATGTTCTGTGGTCAGGAATTTGGGAATGGGAATGGAGTGATTCCAAATTACGGGTTGTTTTACAATCG GAATGGTTCACCTCCTTGGAGACCTGATGATAAAGATGGACATTATGTTTTTGCTATTGGAGACAATTTGACTCCGCGCTACAGGATTCTTAGCAAGATG GGCGAAGGGACTTTTGGGCAAGTCTTGGAATGTTTTGATAATGAAAAGAAAGAATTAGTGGCAATCAAAATTGTCCGCTCCATACACAAGTATCGCGAAG CTGCCATGACTGAAATTGATGTATTGCAGAGGCTGGCCAGGCATGATATTGGTAGCACACGTTGTGTACAAATACGGAATTGGTTTGACTATCGTAATCA TATTTGTATTGTATTTGAGAAGCTTGGACCAAGCTTATACGATTTTCTCCGCAAAAACAGCTATCGTTCATTTCCCATTGATCTTGTCCGGGAGCTTGGC AGACAACTTTTGGAGTCTGTTGCATTTATGCATGATTTACATCTGATTCATACCGACTTGAAGCCTGAAAATATTCTACTGGTTTCCTCTGAGTACATCA AAGTGCCAGATTATAAGTTTCTTTCGCGGTCCACAAAAGATGGTTCCTACTTCAAGAATCTTCCCAAGTCAAGTGCTATTAAGCTCATTGATTTTGGAAG TACCACATTTGAACATCAGGATCACAGTTATGTGGTGTCAACACGGCATTATCGTGCACCGGAGGTTATTTTAGGTCTTGGATGGAACTATCCCTGTGAT ATATGGAGTGTGGGTTGCATACTTGTTGAATTATGTTCTGGTGAGGCCCTTTTTCAAACTCATGAGAACTTGGAGCATCTTGCCATGATGGAGAGGGTTT TAGGGCCATTGCCACAACATATGGTGGTCAGGGCTGATCGACGTGCTGAGAAATATTTCAGGAGAGGCATGCGATTGGATTGGCCTGAGGGTGCAACCTC AAGAGAAAGCATGAAAGCAGTAATGAAGTTGCCTCGTTTGCCTAACCTAATAATGCAGCACGTGGATCATTCTGCTGGTGAATTAATTGATCTCTTGCAA GGTCTCCTAAGACATGATCCAGCAGAGCGGCTCAAAGCCAGGGAAGCTTTAAGGCACCCATTCTTCTCAAGAGATCTTAGAAGATATGGCTATCCCTTGT AG
AA sequence Show only first row Show all	>Potri.016G079900.1 pacid=42810134 polypeptide=Potri.016G079900.1.p locus=Potri.016G079900 ID=Potri.016G079900.1.v4.1 annot-version=v4.1 METQRITEFPHKNMDKRPRKRQRLTWDIPPPPPPFLAPAKVVPGMFCGQEFGNGNGVIPNYGLFYNRNGSPPWRPDDKDGHYVFAIGDNLTPRYRILSKM GEGTFGQVLECFDNEKKELVAIKIVRSIHKYREAAMTEIDVLQRLARHDIGSTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELG RQLLESVAFMHDLHLIHTDLKPENILLVSSEYIKVPDYKFLSRSTKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCD IWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPQHMVVRADRRAEKYFRRGMRLDWPEGATSRESMKAVMKLPRLPNLIMQHVDHSAGELIDLLQ GLLRHDPAERLKAREALRHPFFSRDLRRYGYPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53570		AME2, AFC1	FUS3-complementing gene 1 (.1....		Potri.016G079900 [exp]	0	1	AFC1.1
AT3G26670			Protein of unknown function (D...		Potri.014G139700 [exp]	12.28	0.8434
AT1G32050			SCAMP family protein (.1)		Potri.003G099300 [exp]	33.04	0.7650
AT1G57765			unknown protein		Potri.004G226100 [exp]	36.08	0.8064
AT3G07170			Sterile alpha motif (SAM) doma...		Potri.014G190800 [exp]	64.80	0.7281
AT1G06550			ATP-dependent caseinolytic (Cl...		Potri.002G057700 [exp]	67.74	0.7644
AT5G08560			transducin family protein / WD...		Potri.002G055800 [exp]	76.47	0.7415
AT3G19260		LOH2, LAG1 HOMO...	LONGEVITY ASSURANCE GENE1 HOMO...		Potri.004G141000 [exp]	78.10	0.7753	HOMOLOG.1
AT2G01690			ARM repeat superfamily protein...		Potri.008G134600 [exp]	102.68	0.7307
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Potri.015G049100 [exp]	112.00	0.7538
AT3G11130			Clathrin, heavy chain (.1)		Potri.001G278800 [exp]	140.58	0.7545

Compare expression of checked genes

Potri.016G079900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.