Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53540 234 / 2e-64 unknown protein AT4G28760 106 / 3e-23 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) AT2G39435 100 / 5e-22 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1.2) AT2G20240 87 / 3e-17 Protein of unknown function (DUF3741) (.1) AT5G43880 82 / 1e-15 Protein of unknown function (DUF3741) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G213700 [exp] 1229 / 0 AT3G53540 433 / 1e-136 unknown protein Potri.010G211700 [exp] 270 / 4e-77 AT2G39435 155 / 2e-40 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1.2) Potri.002G253600 [exp] 116 / 3e-26 AT4G28760 752 / 0.0 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.014G194600 [exp] 109 / 4e-24 AT4G28760 583 / 0.0 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.001G103400 [exp] 66 / 2e-10 AT2G45900 86 / 5e-17 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) Potri.014G084600 [exp] 58 / 3e-08 AT4G00440 395 / 4e-124 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Potri.001G239500 [exp] 51 / 5e-06 AT5G02390 149 / 6e-37 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.009G030700 [exp] 45 / 0.0004 AT5G02390 99 / 7e-21 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.002G160000 [exp] 45 / 0.0004 AT4G00440 351 / 6e-107 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024434 [exp] 537 / 3e-178 AT3G53540 449 / 2e-144 unknown protein Lus10025296 [exp] 533 / 1e-175 AT3G53540 456 / 7e-146 unknown protein Lus10003295 [exp] 131 / 1e-31 AT2G39435 115 / 3e-27 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1.2) Lus10030320 [exp] 108 / 3e-24 AT2G39435 99 / 6e-22 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1.2) Lus10011911 [exp] 104 / 1e-22 AT4G28760 535 / 9e-179 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Lus10022843 [exp] 94 / 1e-19 AT4G28760 369 / 2e-116 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Lus10025295 [exp] 64 / 4e-12 AT3G53540 67 / 2e-14 unknown protein Lus10002008 [exp] 59 / 2e-08 AT1G63670 100 / 2e-21 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10035490 [exp] 57 / 6e-08 AT1G63670 100 / 1e-21 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10014716 [exp] 52 / 2e-06 AT3G63430 227 / 2e-65 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12552 [poplar] [flax] DUF3741 Protein of unknown function (DUF3741) PF14309 [poplar] [flax] DUF4378 Domain of unknown function (DUF4378) PF14383 [poplar] [flax] VARLMGL DUF761-associated sequence motif
Representative CDS sequence Show only first row Show all	>Potri.016G080200.3 pacid=42810687 polypeptide=Potri.016G080200.3.p locus=Potri.016G080200 ID=Potri.016G080200.3.v4.1 annot-version=v4.1 ATGTCAAGAGAATCTGAATCCAGAAGGTCTCCGAGTGTTATTGCCAGATTGATGGGCCTTGATGGGCTACCACTGCAGCAATCTTCTCATAAGCATCCAA AGAAATCCTTGGAGAACTACACCCAAAGAATGGTATTGGCAGAGATAGCTCAAAGAAACAGAGGCTCATATGGTCGGTGGTCATCCAGAAAAAGCTCCAA GGATGAGCAAGAATTTAAAGATGTATTTGAAGTTTTAGACACTTCAAAGATGGGTAGTAGTAGTTACTCATCATGTGGAAATGGACACTCAGAGCTCACA GCAGCTGAGATGGCATTCATTCAGCAGAAATTCACGGATGTTAAATGGCTTTCTACCGATGAAAAACTTCAGAATTCAAAGGAATTTCATGATGCTATTG AGGATCTGGACTCCAACAAGGATCTTTTGCTGAAATATCTTCAGCAGCCAGATTCTTTGTTCACAAAGCATCTACATGATTTACAAGGTATCCCTCCACA ATCCCATTGCGGTCGGACTCACATACCAGCTAAGAAGTCATCATATCCTGCACACTGTGGGAGCATTGGCCTAGGCTGTAATATAGAGAGAGAAAACCCA TTGAAGAATCGAAGAAAACCTCATGTTGATCCTTCTAGCTACTCTTATAGTAAGCTTGAAGCTCAAAATCCAGTCAAGTTGTCAAAAGTTCAACTGGATC AGAAAGATGAATCCGCCATTCTCCCTACAAGGATTGTTGTTCTGAAACCAAATATCGGAAAAATGCAGAATTCTAAGAAAAATACCTCATCATCTCAATC TTCTCATGCATCACCTTCAGATTGTAGGAAACACACTGAAACTCCTAGTATCAAGAAAAAGGAGGTGGTGTCATGGGGAAAGAAAAGTTTTCCTGATGAT GCAGGGCCCTCAAGGTATAAGTCTAGAGAATCTAGGGAAATTGCAAGGGAAATCACCAGGAAAATGAGAAAAAATTTCATAAACAGCTCCATGAATTTTT CAACTTCTGGTTTTAGAGGCTATGTCGGGGATGAGAGTTCAACTGAAAATGAGTCTGCAAATGAATCAGAGGAGACAGCAGTGAATTCCAGAAATTCCAT TGATTGGAGTAACCGAAGCATACCTTCATCATCATGCTCTAACGAATCATCGGTGAGCAGAGAGGCCAGGAAGAGACTCTCAGAGAGGTGGAAACTGACT CATAAGTCTGTGAACATGGGAATTGTTAGTCAGAGCAGCACACTAGGTGAAATGCTTGCTACCCCCAACTCGGGAACAAGGCTAGGAAATTCAGATGCCA TGATCTGTAAAAAAGTATTCAGTGATGACGTTGATTGCAATCATGGAACAGTTAGGTGGGATGAACCTTTGGGTATTAGCAGCAGGGAAGGCTGGAAGGA TGTTGGTACTGGGAATCTTTTGAGATCAAGGTCTGTGCTTGCTTCATCTACTATTATCAGTAGTCCTAGAATAGACAAGTGCCGTGAAAATGTTTCCCAT GACAGTTATATGATCCCTAGACAAGTGATCTGGCAGGAAAGAAACAGAACAGTAAAAGGAAATTTCAATAAGAGAGAATGTTCTTCTTCTAGAAATTCCA GATCACGTTCTAAGAAATCTCACATGTCTAGCTGCTCGTATAGATATCACAGTGAGACTTCCTTGGATATTAATTTTGGCCGGGATCAAGTGCAGAGTGA CATTGCAGAATATGATTCACTGGAACAAATTTGTACAGTTTCTGAGACACCAGCTTCTCTTGTCACAGATACAGGTTTAGTTTTTGAAAATATGGTGGAT GTGGTAATTGAGAACAAAGCCATGCAATCTAAGCCTATGGACCAAGAATCATCGACTTATATGTTGGTAAAAGGCAATTCCTCTACTAGTGATCTAGAAG TTTCAAGCTCAAAGGAACCATCAAATGGGCCATCTAAGAAAGGTTCAATTCCCATGCAGCACTCTGTAGCCGAAGTAGAAACTCCAGCAAGCTCGAAGGA GGCTGATCAGCCCAGTCCTGTCTCAGTTCTTGAAACTCCTTTTCCAGATGACCTGTCATCTGGTTCTGAGTGCTTTGAGGGTCTCAACGCCGACCTGAAT GGACTTCGGATGCAGCTTCAACTTCTTAGGTTGGAGTCGGAAGCATACGAGGAAGGACCCATGCTCATCTCTAGTGATGAAGATGTCGAGGGGGGATCTG TTGGATTTACAGAAGCAGCACAAGTAGCTGAGGAGAGCTGTGAATTTTCCTACATAGCAGATGTACTGGTGGACTCCGGTATTAATGATGGCGACCCTGA TACATTCCTGAGAACATTGCACTCCCCAGAATGGCCAGTCAAACCATTGATATTTGAAGAAGTCGAGAAGAAGTACTGTAATCATGCAAGTTGGCCAAGG TCTGAAAGGAGGCTGCTGTTTGACCGTCTAAATTTTGCTCTTCTGGTGATTTACCAGCAATATGCAAATTCACACCCTTGGGTGAGGTCTGCAACTGTGA TTGGTCCCAAGTGGATAAAAAACGGACTCAAGGATAGTCTGTGCAAATTGGTTGCTAGCCATGATAAGAGAGCTAACGAGGACATTGCAGCAGAAAAAAT ACTGGAAAGGGAATCGCAGTGGTTGGATTTGAGGGAGGACGTTGATATTATAGGTAGGGAAATTGAGAGGCTACTGACAGAAGAGTTGGTAAGAGAGCTA GTAGCAGTGTAG
AA sequence Show only first row Show all	>Potri.016G080200.3 pacid=42810687 polypeptide=Potri.016G080200.3.p locus=Potri.016G080200 ID=Potri.016G080200.3.v4.1 annot-version=v4.1 MSRESESRRSPSVIARLMGLDGLPLQQSSHKHPKKSLENYTQRMVLAEIAQRNRGSYGRWSSRKSSKDEQEFKDVFEVLDTSKMGSSSYSSCGNGHSELT AAEMAFIQQKFTDVKWLSTDEKLQNSKEFHDAIEDLDSNKDLLLKYLQQPDSLFTKHLHDLQGIPPQSHCGRTHIPAKKSSYPAHCGSIGLGCNIERENP LKNRRKPHVDPSSYSYSKLEAQNPVKLSKVQLDQKDESAILPTRIVVLKPNIGKMQNSKKNTSSSQSSHASPSDCRKHTETPSIKKKEVVSWGKKSFPDD AGPSRYKSRESREIAREITRKMRKNFINSSMNFSTSGFRGYVGDESSTENESANESEETAVNSRNSIDWSNRSIPSSSCSNESSVSREARKRLSERWKLT HKSVNMGIVSQSSTLGEMLATPNSGTRLGNSDAMICKKVFSDDVDCNHGTVRWDEPLGISSREGWKDVGTGNLLRSRSVLASSTIISSPRIDKCRENVSH DSYMIPRQVIWQERNRTVKGNFNKRECSSSRNSRSRSKKSHMSSCSYRYHSETSLDINFGRDQVQSDIAEYDSLEQICTVSETPASLVTDTGLVFENMVD VVIENKAMQSKPMDQESSTYMLVKGNSSTSDLEVSSSKEPSNGPSKKGSIPMQHSVAEVETPASSKEADQPSPVSVLETPFPDDLSSGSECFEGLNADLN GLRMQLQLLRLESEAYEEGPMLISSDEDVEGGSVGFTEAAQVAEESCEFSYIADVLVDSGINDGDPDTFLRTLHSPEWPVKPLIFEEVEKKYCNHASWPR SERRLLFDRLNFALLVIYQQYANSHPWVRSATVIGPKWIKNGLKDSLCKLVASHDKRANEDIAAEKILERESQWLDLREDVDIIGREIERLLTEELVREL VAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53540			unknown protein		Potri.016G080200 [exp]	0	1
AT2G35060		KUP11	K+ uptake permease 11, K+ upta...		Potri.001G123700 [exp]	3.00	0.9021	Pt-KUP10.1
AT1G10290		DRP2A, ADL6	DYNAMIN-RELATED PROTEIN 2A, dy...		Potri.003G001400 [exp]	5.09	0.9104	Pt-DH1.2
AT3G28430			unknown protein		Potri.006G204600 [exp]	5.09	0.9093
AT3G56930			DHHC-type zinc finger family p...		Potri.006G027400 [exp]	5.29	0.8936
AT3G52120			SWAP (Suppressor-of-White-APri...		Potri.009G064600 [exp]	9.74	0.8925
AT1G08030		AQC1, TPST	active quiescent center1, tyro...		Potri.009G011400 [exp]	14.69	0.8703
AT3G45850			P-loop containing nucleoside t...		Potri.001G233700 [exp]	19.89	0.8898
AT3G12180			Cornichon family protein (.1)		Potri.016G051000 [exp]	20.17	0.8820
AT2G38650		GAUT7, LGT7	LIKE GLYCOSYL TRANSFERASE 7, g...		Potri.006G114300 [exp]	21.42	0.8551
AT4G10550			Subtilase family protein (.1.2...		Potri.001G450401 [exp]	21.49	0.8457

Compare expression of checked genes

Potri.016G080200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.