Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55140 555 / 0 Pectin lyase-like superfamily protein (.1.2) AT3G09540 492 / 6e-175 Pectin lyase-like superfamily protein (.1) AT1G30350 187 / 1e-55 Pectin lyase-like superfamily protein (.1) AT5G55720 182 / 2e-53 Pectin lyase-like superfamily protein (.1) AT1G11920 169 / 8e-49 Pectin lyase-like superfamily protein (.1) AT3G54920 172 / 1e-48 PMR6 powdery mildew resistant 6, Pectin lyase-like superfamily protein (.1) AT3G27400 163 / 3e-46 Pectin lyase-like superfamily protein (.1) AT5G04310 165 / 5e-46 Pectin lyase-like superfamily protein (.1) AT5G63180 160 / 4e-45 Pectin lyase-like superfamily protein (.1) AT2G02720 156 / 3e-43 Pectate lyase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G214400 [exp] 702 / 0 AT3G55140 553 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.008G048600 [exp] 549 / 0 AT3G55140 571 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.011G008000 [exp] 176 / 4e-51 AT4G22080 540 / 0.0 root hair specific 14 (.1) Potri.011G008100 [exp] 171 / 4e-49 AT4G22080 504 / 2e-179 root hair specific 14 (.1) Potri.004G007300 [exp] 164 / 8e-47 AT4G22080 489 / 1e-173 root hair specific 14 (.1) Potri.001G339500 [exp] 160 / 3e-45 AT4G24780 617 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.012G091500 [exp] 159 / 1e-44 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.015G087800 [exp] 157 / 5e-44 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G148800 [exp] 154 / 1e-42 AT5G15110 523 / 0.0 Pectate lyase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025290 [exp] 588 / 0 AT3G55140 536 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10024439 [exp] 577 / 0 AT3G55140 534 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10030313 [exp] 533 / 0 AT3G55140 571 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10003307 [exp] 531 / 0 AT3G55140 562 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10011257 [exp] 172 / 1e-49 AT1G11920 530 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011258 [exp] 170 / 8e-49 AT1G11920 549 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10018430 [exp] 170 / 9e-49 AT1G11920 525 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10036946 [exp] 157 / 7e-44 AT5G63180 627 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10033037 [exp] 156 / 3e-43 AT5G63180 671 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10014887 [exp] 155 / 5e-43 AT5G63180 620 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF00544 [poplar] [flax] Pectate_lyase_4 Pectate lyase
Representative CDS sequence Show only first row Show all	>Potri.016G080600.1 pacid=42810628 polypeptide=Potri.016G080600.1.p locus=Potri.016G080600 ID=Potri.016G080600.1.v4.1 annot-version=v4.1 ATGGGAAACTCTCATGATCATGGACATCGCCGCAAGTTCCGTGACAACGGAAACGTTCCTTTCCCCGATAAAACTGCTGCAGCTCCTTCGGCATCACAGC CTGTCCCACCCTTTATTTATCAACCCCAGATTCCCACCTCATCAACCCGCACACCTAAGATGGCTACCGCTTTGCCTTACCCTCATGTCGACTCTTCCTT ACGTGCTCTTGCTGCCCAAGCCGAGGGCTTTGGTCGCTCTGCCAATGGTGGCCTCCATGGCCCCATTTATTACGTCACTACCTTAGCAGATGATGGGCCT GGATCACTTAGAGATGGATGTCGTAAAAAGGAGCCACTTTGGATTGTCTTTGAAGTATCAGGCACTATTCAACTTAGATCTTACTTGAATGTTTCGTCTT ATAAAACCATTGATGGCCGGGGCCAAAGAATAAAACTTACAGGCAAGGGTTTGAGGCTGAAGGAATGTGAACATGTTATTATATGCAATTTAGAGTTTGA AGGTGGTAGAGGACCTGATGTTGATGGCATTCAGATAAAGCCCAAGTCAAAGCACATATGGATAGATCGTTGCAGCCTTCGTGATTATGATGATGGGTTG ATAGATATCACACGAGAAAGCACAGATATTACTATTTCTAGGTGTTACTTTGGGCAACATGACAAAACAATGCTAATTGGAGCAGATCCTACTCATGTTG GTGACAGATGTATTCGAGTAACCATCCATCATTGCTTTTTTGATGGAACAAGACAGCGCCATCCTCGTGTTAGATTTGGAAAAGTACATTTATACAATAA CTATACCAGAAACTGGGGCATTTATGCTGTTTGTGCCAGTGTAGAGTCACAGATCTACTCCCAAAGCAACATATATGAAGCAGGGCAGAAGAAGATTGCA TTTAAATATCTTTCTGAGAAGGCAGCTGACAAGGAGAAAGCAAGGAGTGGCAGCATAAGGTCTGAAGGAGACTTATTTGTTACTGGGACTCAAGCAGGGT TAATGACTGAGGATGGTGAGTGCTGTATGTTTCATCCCAGTGAATATTACCCTACATGGACAGTAGAACCTCCTACAGATAGCCTTAAACAGGTTCTCCA GCATTGTACTGGATGGCAGTGTGTTCCACGGCCAGCCGATCAGCCACTAGCTGCACAGTGA
AA sequence Show only first row Show all	>Potri.016G080600.1 pacid=42810628 polypeptide=Potri.016G080600.1.p locus=Potri.016G080600 ID=Potri.016G080600.1.v4.1 annot-version=v4.1 MGNSHDHGHRRKFRDNGNVPFPDKTAAAPSASQPVPPFIYQPQIPTSSTRTPKMATALPYPHVDSSLRALAAQAEGFGRSANGGLHGPIYYVTTLADDGP GSLRDGCRKKEPLWIVFEVSGTIQLRSYLNVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGPDVDGIQIKPKSKHIWIDRCSLRDYDDGL IDITRESTDITISRCYFGQHDKTMLIGADPTHVGDRCIRVTIHHCFFDGTRQRHPRVRFGKVHLYNNYTRNWGIYAVCASVESQIYSQSNIYEAGQKKIA FKYLSEKAADKEKARSGSIRSEGDLFVTGTQAGLMTEDGECCMFHPSEYYPTWTVEPPTDSLKQVLQHCTGWQCVPRPADQPLAAQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55140			Pectin lyase-like superfamily ...		Potri.016G080600 [exp]	0	1
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Potri.004G059000 [exp]	5.47	0.7065	GSK1.2
AT1G04520		PDLP2	plasmodesmata-located protein ...		Potri.002G257300 [exp]	11.26	0.7256
AT3G07030			Alba DNA/RNA-binding protein (...		Potri.002G240601 [exp]	11.31	0.6832
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Potri.004G145500 [exp]	12.12	0.6840	OST1.2
AT1G51700	DOF	ADOF1, AtDof1. ...	DOF zinc finger protein 1 (.1)		Potri.004G038800 [exp]	16.61	0.6845
AT3G22440			FRIGIDA-like protein (.1)		Potri.008G153000 [exp]	42.42	0.6461
AT1G09660			RNA-binding KH domain-containi...		Potri.003G005500 [exp]	48.08	0.6651
AT1G32583			unknown protein		Potri.015G101000 [exp]	48.12	0.6737
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Potri.010G188100 [exp]	57.00	0.6396
AT4G28365		AtENODL3	early nodulin-like protein 3 (...		Potri.001G398800 [exp]	59.23	0.6539

Compare expression of checked genes

Potri.016G080600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.