Plant FIBer expression Database

Potri.016G080800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G39370 157 / 9e-45 MAKR4 MEMBRANE-ASSOCIATED KINASE REGULATOR 4, unknown protein
AT2G37380 97 / 2e-22 MAKR3 MEMBRANE-ASSOCIATED KINASE REGULATOR 3, unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G214700
[exp]
427 / 2e-149 AT2G39370 116 / 2e-29 MEMBRANE-ASSOCIATED KINASE REGULATOR 4, unknown protein
Potri.010G212800
[exp]
207 / 1e-62 AT2G39370 176 / 2e-51 MEMBRANE-ASSOCIATED KINASE REGULATOR 4, unknown protein
Potri.008G048300
[exp]
201 / 1e-60 AT2G39370 175 / 2e-51 MEMBRANE-ASSOCIATED KINASE REGULATOR 4, unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040336
[exp]
111 / 1e-27 AT2G39370 174 / 8e-52 MEMBRANE-ASSOCIATED KINASE REGULATOR 4, unknown protein
Lus10030311
[exp]
95 / 2e-21 AT2G39370 181 / 4e-54 MEMBRANE-ASSOCIATED KINASE REGULATOR 4, unknown protein
Lus10023461
[exp]
92 / 2e-20 AT2G39370 177 / 4e-53 MEMBRANE-ASSOCIATED KINASE REGULATOR 4, unknown protein
Lus10003309
[exp]
91 / 2e-20 AT2G39370 175 / 2e-52 MEMBRANE-ASSOCIATED KINASE REGULATOR 4, unknown protein
Lus10024441
[exp]
78 / 1e-15 AT2G37380 87 / 8e-19 MEMBRANE-ASSOCIATED KINASE REGULATOR 3, unknown protein
Lus10025286
[exp]
64 / 8e-11 AT2G37380 88 / 2e-19 MEMBRANE-ASSOCIATED KINASE REGULATOR 3, unknown protein
PFAM info
Representative CDS sequence
>Potri.016G080800.1 pacid=42810275 polypeptide=Potri.016G080800.1.p locus=Potri.016G080800 ID=Potri.016G080800.1.v4.1 annot-version=v4.1
ATGCTACATGAAATGGCCACAAACCAATCTTTGTGTATTCATGCAGATGATGACTGCATTGAAATGGAATTGAGCTCCACTTCGAACTTCATTTGTTACT
CCATTAGCTCTCCTCCACCACAGAACAGAGAGTTTGAGTTCCAAATGTCTTCAGTTTCTCATGGTAGAGAAGCCACAACATCCCCAGCTGATGAACTCTT
CTACAAGGGAAAACTCCTCCCTCTTCATCTCCCTCCTCGCTTGCTAATGGTTCAAAAGCTCCTCCAAAACCCCACAACCACTACCTTAAACAGTAAAAAA
GAATCAGCCTTTGAAGAAAACTATGTCATTCCCTTCACCACTAGCTCCACTGCACCTTCCACTGACATCAATACCCCATTGGAATCTTGCAATATCTCAC
CATCAGAATCTTGCAGGGTTAGTAGTGAACTAAACCCAGATGAATATTTCTTTGAATGGCCAACTGAAGCTAACTGTTTCCTCGGAGATCATCAAAAGAA
GTCTTGGACTAAGAAGCTAAAGCAATCCTCGCTTGGTCTGAAACTCAAGGCTTCAAGAGCATATCTAAAGTCTTTGTTTAAAAAGTCTGGTTGCACAGAC
GAGTCCTGTGCTAAAGCGGCATGCAATGCAGAAGATGAAACTGTTTCAAACGGCCAGGACTGTTTGAATAAGTACATGAAAGTACCGAAGAAGAGTCCTT
TTGGGAATATTGATAATGACAGATGCAGGATATCAAACACTCTCAAGAGAAGCTTTGAGAAAGAGATGGCTGAAGATGGTTTTCGTTGCCAAAGGAGGTC
TTTCTCTGGGGCAATTCAATGGCATTCTGCAACCAAGTCTTCATCCTTTTCATCTTCATCCACATCTTCATCTGGTTTGTCTTCTTCATCTTCATCCTTT
TCATTTAGTTCAAATGGGTTCTGTGACTTACAGTTGCTCAAGAGAAGTGGCAGTTCAAATTCAGAGTTTGAGAGTTCAATTGCGGAAGCAATTGCTCATT
GTAAAAGGTCACATCAGTTGTTTAGTTCAAGAAAGAGTTCAAGTGAAGTTGGAGTCTGTTCATTGTCTGCTTCAGTAATTGCAGCTCGTGGGGATCAAGA
GACGCCTAGGCTACGCCGCATATAA
AA sequence
>Potri.016G080800.1 pacid=42810275 polypeptide=Potri.016G080800.1.p locus=Potri.016G080800 ID=Potri.016G080800.1.v4.1 annot-version=v4.1
MLHEMATNQSLCIHADDDCIEMELSSTSNFICYSISSPPPQNREFEFQMSSVSHGREATTSPADELFYKGKLLPLHLPPRLLMVQKLLQNPTTTTLNSKK
ESAFEENYVIPFTTSSTAPSTDINTPLESCNISPSESCRVSSELNPDEYFFEWPTEANCFLGDHQKKSWTKKLKQSSLGLKLKASRAYLKSLFKKSGCTD
ESCAKAACNAEDETVSNGQDCLNKYMKVPKKSPFGNIDNDRCRISNTLKRSFEKEMAEDGFRCQRRSFSGAIQWHSATKSSSFSSSSTSSSGLSSSSSSF
SFSSNGFCDLQLLKRSGSSNSEFESSIAEAIAHCKRSHQLFSSRKSSSEVGVCSLSASVIAARGDQETPRLRRI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G39370 MAKR4 MEMBRANE-ASSOCIATED KINASE REG... Potri.016G080800
[exp]
0 1
AT4G22360 SWIB complex BAF60b domain-con... Potri.016G013400
[exp]
9.79 0.6917
Potri.003G162750
[exp]
15.93 0.6297
AT4G02810 FAF1 FANTASTIC FOUR 1, Protein of u... Potri.002G053400
[exp]
24.49 0.6219
AT2G15180 Zinc knuckle (CCHC-type) famil... Potri.001G006850
[exp]
24.69 0.6206
AT2G17570 Undecaprenyl pyrophosphate syn... Potri.002G039400
[exp]
38.82 0.5953
AT4G11270 Transducin/WD40 repeat-like su... Potri.001G098700
[exp]
42.42 0.5604
AT3G09510 Ribonuclease H-like superfamil... Potri.004G015067
[exp]
42.96 0.5859
Potri.004G183401
[exp]
43.17 0.5999
Potri.006G122650
[exp]
43.63 0.5756
AT2G31083 AtCLE5, CLE5, C... CLAVATA3/ESR-RELATED 5 (.1) Potri.011G096900
[exp]
47.40 0.5646

Potri.016G080800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.