Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09560 870 / 0 ATPAH1 PHOSPHATIDIC ACID PHOSPHOHYDROLASE 1, Lipin family protein (.1.2.3) AT5G42870 466 / 8e-150 ATPAH2 phosphatidic acid phosphohydrolase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G214800 [exp] 1511 / 0 AT3G09560 845 / 0.0 PHOSPHATIDIC ACID PHOSPHOHYDROLASE 1, Lipin family protein (.1.2.3) Potri.014G031000 [exp] 411 / 7e-128 AT5G42870 468 / 1e-148 phosphatidic acid phosphohydrolase 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025284 [exp] 1028 / 0 AT3G09560 946 / 0.0 PHOSPHATIDIC ACID PHOSPHOHYDROLASE 1, Lipin family protein (.1.2.3) Lus10009064 [exp] 978 / 0 AT3G09560 894 / 0.0 PHOSPHATIDIC ACID PHOSPHOHYDROLASE 1, Lipin family protein (.1.2.3) Lus10021733 [exp] 366 / 2e-111 AT5G42870 432 / 5e-136 phosphatidic acid phosphohydrolase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04571 [poplar] [flax] Lipin_N lipin, N-terminal conserved region CL0137 [poplar] [flax] HAD PF08235 [poplar] [flax] LNS2 LNS2 (Lipin/Ned1/Smp2) CL0137 [poplar] [flax] PF16876 [poplar] [flax] Lipin_mid Lipin/Ned1/Smp2 multi-domain protein middle domain
Representative CDS sequence Show only first row Show all	>Potri.016G081000.4 pacid=42809977 polypeptide=Potri.016G081000.4.p locus=Potri.016G081000 ID=Potri.016G081000.4.v4.1 annot-version=v4.1 ATGAATGTTGTTGGGAAAGTAGGTAGTTTAATTTCTCAGGGTATGTACTCAGTTGTGACCCCTTTTCATCCTTTTGGCGGGGCTGTGGATGTGATTGTGG TACAACAGCAGGATGGGACATTTCGAAGTACCCCATGGTATGTTCGATTTGGTAAATTTCAGGGTGTTCTTAAGGGAGCAGAGAAGATTGTCCGCATAAA TGTCAATGGTGTTGAAGCGAATTTTCACATGTATCTTGATAATTCCGGTGAAGCTTATTTCATAAAGGAGGTTCAGCCTGGTAAAGGAAGTGAGGCAAAT GGGGTGATAAAGGATTCTAATAGCATGACAATGTCAAATGAAGGTGTCAGTGTTGGTTTTAGTGATGTCGGTGATAATAATGTTGTTGGAATATCTAGGC TTGAGCATAGTGTTTCCGATTCTAGGGTGATTCAGTTGCGAGAGGAAGAGAATTCATCAGGTGCAGCCCAACTTCGAAGGGCAGAATCTGATGGTGACCG GAGGTATTATGATTTTCAAGATGAGCAAGCCTCTATGGATGATTCAGTTGAGTTATCAGAGTATGCTTCTGATATATATAATGGTTTAGATGGTGAGCAT CCTGCTGTTTCACAAGGTTCAGATTCAGAAGTGATCTTGGTGAGTGTGGATGGTCATGTCCTGACAGCCCCTGTATTGGAATCAGAACAGAATACCGAGA GTGTGCAATTATGCATCCCTCAGTTCCATCTGGGCCCAGGTGATGACACCGAGGAGTTTAATTTAGGTGATGATGCATGGGCTGCTGATTACATCACTAA GCTGAATGCATCCGTGTCTAATTTTTCATCTGATAATGCTTACAGTGTAAATAATGGTGGTAATGCTCGCCAACCGGAAGTTTCTGAAGGTGACAGGGAG CTTTTATGTCAAAGTCAAGAAATTCAGGACATTCCTAGGTCAGAAGGAGATCTTCTGGTGCAAAGTGATTCAGATGCATCTGTTAGGATAAATAGGGAAG AGGTTTTCAAAAGCTGCTTGGCGTTACCGGAATTGGCCAAACCGGGTGGAATTGCTGATCCTGAGGAAACAGATACTTCACCTGAGGTGCAAAAAGATTC ACATGCGGAGTCTCCTTGTAGTCCTCCAGCAGTTGATCAAACTACTAATAGAGATCTTGTTGAATTCACAGATAATGGCTGTAATTCTGATTCTAGCGGC CTCCATGGATCACCTACTGTGCAGGTTGAACTCAAAGCAGCAGAGAAAAATGCTTCAAGGACAGAACATATAGGTGCTGACAGCACATGTACTTCTGTTA GAATTGGTAACAGTTCAGATGAGATGGGTGAAGAGTCTTATCACATGTCCACAGTAGGTGAAGAGTTGGATAATAGCCTGCAAGGACCTGTTCCTGAAGA TGAGTCCAGTAAAAGCGAGACTGTGAAACCACAAATAGAGTGCGAAGCTTGTTCAAGCAAAGGGTTTGAGATCTCCCTCTGTGGAAAGGAACTCCATTCA GGTATGGGCTTGGAGTCTGCTGCTGAAGTGTTTGTATCACATCGCATATCTGCTGAGGAATTTAAAAACTCTGAAACATCAATTATCAGGAATGAAAATT TAATAATCAGATACAGAGAGAAGTACTTCACGTGGGAAAAGGCTGCTCCTATTGTGCTTGGAATGGCTGCATTTGGTTTGGATTTACCTGCTGAGCCCAA AGATGCGATTCCTGTGGAGCTGGATGACATACTTGAGCAAAGGGATGATGATGCTGGGATTACTTCCGCACCATCTAGCCGCAGATGGAGGCTTTGGCCT ATTCCATTTAGAAGGGTTAAGACAAGCAGTAACTCATCAAGTGAAGAGTTATTTGTTGATTCTGAATCTGGAGTGCAAAACTCAAATGTTGAATCAACTT CAGCATCCTGTGGTGGTTCTGAGTCTCCTCACAAGCAGTTTTTAAGGACAAATGTTCCAACTAGTGAGCAGATAGCATCATTGAATCTGAAAGATGGTCA AAATTTGATAACATTCAGTTTCTCTACTAGGGTTCTAGGTACACAACAGGTTGATTGTCATATCTACTTATGGAAGTGGAATGCAAGGATAGTGATTTCA GATGTGGATGGAACAATTACCAGGTCTGATGTTTTGGGTCAATTCATGCCCCTGGTTGGAAAGGATTGGACACAATCTGGAGTTGCTAAACTTTTTTGTG CCATTAAGGAGAATGGATATCAGCTATTGTTTCTGAGTGCACGTGCAATTGTTCAGGCGTATCTAACCAGAAGTTTCCTTTTCAACCTAAAGCAGGATGG AAAAACCCTACCAAATGGACCTGTTGTTATTTCACCTGATGGATTGTTTCCCTCATTGTACCGGGAAGTCATAAGAAGAGCTCCTCATGAGTTCAAGATT GCGTGCTTAGAGGACATTAAAAGACTCTTTCCTTCTGATTACAACCCGTTCTATGCGGGATTCGGAAATAGAGACACCGATGAGCTTAGTTACAGGAAAA TTGGGATTCCGAAGGGCAAAATATTTATTATAAACCCAAAGGGTGAGGTGGCCATTAGTCATCGCATCGATGTGAAGTCCTACACATCATTACACACGCT GGTCAATGATATGTTCCCCCCTACATCGTCAGCTGAGCAGGAAGATTATAACTCATGGAATTTTTGGAAGGTGCCATTGCCCGAGATTGAGTTCTAG
AA sequence Show only first row Show all	>Potri.016G081000.4 pacid=42809977 polypeptide=Potri.016G081000.4.p locus=Potri.016G081000 ID=Potri.016G081000.4.v4.1 annot-version=v4.1 MNVVGKVGSLISQGMYSVVTPFHPFGGAVDVIVVQQQDGTFRSTPWYVRFGKFQGVLKGAEKIVRINVNGVEANFHMYLDNSGEAYFIKEVQPGKGSEAN GVIKDSNSMTMSNEGVSVGFSDVGDNNVVGISRLEHSVSDSRVIQLREEENSSGAAQLRRAESDGDRRYYDFQDEQASMDDSVELSEYASDIYNGLDGEH PAVSQGSDSEVILVSVDGHVLTAPVLESEQNTESVQLCIPQFHLGPGDDTEEFNLGDDAWAADYITKLNASVSNFSSDNAYSVNNGGNARQPEVSEGDRE LLCQSQEIQDIPRSEGDLLVQSDSDASVRINREEVFKSCLALPELAKPGGIADPEETDTSPEVQKDSHAESPCSPPAVDQTTNRDLVEFTDNGCNSDSSG LHGSPTVQVELKAAEKNASRTEHIGADSTCTSVRIGNSSDEMGEESYHMSTVGEELDNSLQGPVPEDESSKSETVKPQIECEACSSKGFEISLCGKELHS GMGLESAAEVFVSHRISAEEFKNSETSIIRNENLIIRYREKYFTWEKAAPIVLGMAAFGLDLPAEPKDAIPVELDDILEQRDDDAGITSAPSSRRWRLWP IPFRRVKTSSNSSSEELFVDSESGVQNSNVESTSASCGGSESPHKQFLRTNVPTSEQIASLNLKDGQNLITFSFSTRVLGTQQVDCHIYLWKWNARIVIS DVDGTITRSDVLGQFMPLVGKDWTQSGVAKLFCAIKENGYQLLFLSARAIVQAYLTRSFLFNLKQDGKTLPNGPVVISPDGLFPSLYREVIRRAPHEFKI ACLEDIKRLFPSDYNPFYAGFGNRDTDELSYRKIGIPKGKIFIINPKGEVAISHRIDVKSYTSLHTLVNDMFPPTSSAEQEDYNSWNFWKVPLPEIEF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G09560		ATPAH1	PHOSPHATIDIC ACID PHOSPHOHYDRO...		Potri.016G081000 [exp]	0	1
AT2G16950		ATTRN1	transportin 1 (.1.2)		Potri.004G177700 [exp]	6.48	0.7403
AT1G71100		RSW10	RADIAL SWELLING 10, Ribose 5-p...		Potri.006G039800 [exp]	7.87	0.7299
AT4G02480			AAA-type ATPase family protein...		Potri.012G096300 [exp]	12.40	0.7534
AT2G39580			unknown protein		Potri.008G052500 [exp]	14.66	0.7768
AT1G61850			phospholipases;galactolipases ...		Potri.011G000200 [exp]	15.29	0.7706
AT4G00450		CCT, CRP	CRYPTIC PRECOCIOUS, CENTER CIT...		Potri.014G084500 [exp]	16.61	0.7585
AT4G23000			Calcineurin-like metallo-phosp...		Potri.014G034400 [exp]	18.00	0.7646
AT1G15890			Disease resistance protein (CC...		Potri.011G124240 [exp]	19.33	0.7415
AT5G56290		EMB2790, PEX5, ...	EMBRYO DEFECTIVE 2790, ARABIDO...		Potri.001G473100 [exp]	19.79	0.7800	PEX5.2
AT1G50030		TOR	target of rapamycin (.1.2)		Potri.004G147800 [exp]	22.24	0.7889

Compare expression of checked genes

Potri.016G081000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.