Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18520 610 / 0 Lung seven transmembrane receptor family protein (.1) AT3G09570 603 / 0 Lung seven transmembrane receptor family protein (.1) AT5G02630 481 / 4e-169 Lung seven transmembrane receptor family protein (.1) AT5G42090 398 / 4e-136 Lung seven transmembrane receptor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G214900 [exp] 680 / 0 AT5G18520 612 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.003G147700 [exp] 400 / 6e-137 AT5G42090 639 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.001G083100 [exp] 397 / 5e-136 AT5G42090 642 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.013G049500 [exp] 392 / 8e-134 AT5G18520 430 / 2e-148 Lung seven transmembrane receptor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025283 [exp] 631 / 0 AT5G18520 697 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10009065 [exp] 558 / 0 AT5G18520 626 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10008267 [exp] 395 / 3e-135 AT5G42090 690 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10000821 [exp] 363 / 7e-122 AT5G18520 409 / 6e-140 Lung seven transmembrane receptor family protein (.1) Lus10033235 [exp] 338 / 8e-115 AT5G42090 520 / 0.0 Lung seven transmembrane receptor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0192 [poplar] [flax] GPCR_A PF10192 [poplar] [flax] GpcrRhopsn4 Rhodopsin-like GPCR transmembrane domain
Representative CDS sequence Show only first row Show all	>Potri.016G081300.1 pacid=42810624 polypeptide=Potri.016G081300.1.p locus=Potri.016G081300 ID=Potri.016G081300.1.v4.1 annot-version=v4.1 ATGAATAAACCACCGCATCTCCTCCTCCCTCTCGTCCTCCTCTCCCTCCTCTCCCTCCTCTCCCTCTCCACCGCCGAGATCAAAACTCTATCAATCACCA ACGACGCACGCGCCATGATCCTCTTCGAAAAATTCGGCTTCACGCCAACTGGACACGTGAACATCTCTGTACACTCCGTCTCCGTTGCCTCTTCTGTCAA CGCTCCAAATCCCGTCTCTTCACGCCTCGGTTTTTTTCTCCTTTCCGAAGAATCTCGCCTTCAAGTCATCCTCGAGATCCAAGAAAACCCTAACTTCTGC GTTCTCGATTCTCACTACATTCTATCTCTCTTCACTTTCCGTGATCTCTCACCGCCTCCGCTCTCGTCTTTTAACCAATCTTATCCAGTCACTGCTCCAA ATGAGTACTTACTCTTCTTCGCCAATTGCGCGCCGGAAACGCGCGTGTCCATGTCCGTAAAGACTCAGGTGTATAATTTAGACCGCGACGGGTCTAAGGA TTATCTTTCTGCAGGGTTAACGCAATTGCCTTCGTTATTCTTTCTTTATTTCCTTGCTTATGCTGCATTTTTAGGGTTATGGATTTATGTTTGTTATAAC AATAAAAGATCTGTTCACCGGATCCATTTATTAATGGGTGGGTTGTTACTTATGAAGGCTCTTAATTTGATTTGTGCCGCTGAGGATAAGCATTATGTGA AGGTTACCGGGACTCCACACGGTTGGGATGTGTTGTTTTACATTTTCCAGTTTATTCGTGTGGTTTTGTTGTTCACTGTTATAGTTTTGATTGGGACTGG TTGGTCATTTTTGAAGCCGTTTTTGCAAGAGAAGGAGAAGAAGGTGCTGATGGTTGTGATTCCACTTCAGGTCTTGGCTAATATAGCTTCCGTTGTGATT GGTGAAACTGGTCCCTTTATTAAGGATTGGGTAACTTGGAATCAGGTGTTTTTATTGGTTGATATTATTTGTTGTTGCGCTATTATTTTCCCAATCGTGT GGTCGATTAGGTCGTTGAGAGAGAATTCGAAGACGGATGGGAAGGCTGCTAGGAATCTGGCGAAATTGCAGTTATTTAGACAGTTTTATATTGTGGTTAT TGGGTACTTGTATTTCACAAGGATTGTGGTGTTTGCATTGAAGACGATTGCAGCTTACAAGTATCAGTGGGTGAGTAATGCTGCTGAGGAGACTGCTAGT TTGTTGTTTTATGTGGTGATATTTTATATGTTCAGGCCCGTGGAGAAGAATGAGTACTTTGTTCTTGACGAGGAGGAGGAGGAAGCTGCAGAGTTGGCTT TGAGGGATGAAGAATTTGAGCTTTGA
AA sequence Show only first row Show all	>Potri.016G081300.1 pacid=42810624 polypeptide=Potri.016G081300.1.p locus=Potri.016G081300 ID=Potri.016G081300.1.v4.1 annot-version=v4.1 MNKPPHLLLPLVLLSLLSLLSLSTAEIKTLSITNDARAMILFEKFGFTPTGHVNISVHSVSVASSVNAPNPVSSRLGFFLLSEESRLQVILEIQENPNFC VLDSHYILSLFTFRDLSPPPLSSFNQSYPVTAPNEYLLFFANCAPETRVSMSVKTQVYNLDRDGSKDYLSAGLTQLPSLFFLYFLAYAAFLGLWIYVCYN NKRSVHRIHLLMGGLLLMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMVVIPLQVLANIASVVI GETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRENSKTDGKAARNLAKLQLFRQFYIVVIGYLYFTRIVVFALKTIAAYKYQWVSNAAEETAS LLFYVVIFYMFRPVEKNEYFVLDEEEEEAAELALRDEEFEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18520			Lung seven transmembrane recep...		Potri.016G081300 [exp]	0	1
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Potri.006G087500 [exp]	1.73	0.9591	LAC110c
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Potri.006G104400 [exp]	3.60	0.9339
AT4G31480			Coatomer, beta subunit (.1.2)		Potri.018G007400 [exp]	4.00	0.9569
AT1G01510		AN	ANGUSTIFOLIA, NAD(P)-binding R...		Potri.014G089400 [exp]	4.69	0.9287
AT5G11980			conserved oligomeric Golgi com...		Potri.006G225500 [exp]	4.89	0.9479
AT4G01400			unknown protein		Potri.002G179600 [exp]	4.89	0.9352
AT3G02350		GAUT9	galacturonosyltransferase 9 (....		Potri.004G111000 [exp]	7.00	0.9172
AT1G08700		PS1	Presenilin-1 (.1)		Potri.013G067700 [exp]	7.87	0.9103
AT3G05710		ATSYP43, SYP43	syntaxin of plants 43 (.1.2)		Potri.013G011100 [exp]	8.24	0.9218	SYP41.2
AT1G53290			Galactosyltransferase family p...		Potri.001G392700 [exp]	8.48	0.9359

Compare expression of checked genes

Potri.016G081300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.