Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37340 267 / 3e-89 RSZ33, ATRSZ33, RS2Z33, AT-RS2Z33 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) AT3G53500 259 / 3e-86 RSZ32, RS2Z32, At-RS2Z arginine/serine-rich zinc knuckle-containing protein 32, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) AT1G02840 75 / 2e-15 ATSRP34, SR1, SR34, At-SR34 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT4G02430 72 / 7e-15 SR34b, At-SR34b Serine/Arginine-Rich Protein Splicing Factor 34b, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G09140 72 / 2e-14 ATSRP30.1, ATSRP30.2, SR30, At-SR30 Serine/Arginine-Rich Protein Splicing Factor 30, SERINE-ARGININE PROTEIN 30 (.1.2) AT3G61860 67 / 9e-13 ATRSP31, At-RS31 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G46610 64 / 1e-11 RS31a, At-RS31a arginine/serine-rich splicing factor 31a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G53720 63 / 4e-11 ATCYP59, CYP59 cyclophilin 59 (.1) AT3G49430 61 / 2e-10 SRP34A, SR34a, At-SR34a Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3) AT1G23860 58 / 4e-10 SRZ21, SRZ-21, RSZP21, RSZ21, At-RSZ21 RS-containing zinc finger protein 21 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G215200 [exp] 383 / 1e-134 AT2G37340 266 / 6e-89 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) Potri.013G015500 [exp] 69 / 3e-13 AT1G09140 263 / 7e-88 Serine/Arginine-Rich Protein Splicing Factor 30, SERINE-ARGININE PROTEIN 30 (.1.2) Potri.014G129900 [exp] 69 / 4e-13 AT1G02840 272 / 5e-91 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.002G205025 [exp] 68 / 5e-13 AT1G02840 272 / 1e-90 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.012G021800 [exp] 68 / 6e-13 AT3G49430 317 / 2e-108 Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3) Potri.015G004600 [exp] 67 / 7e-13 AT3G49430 303 / 1e-103 Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3) Potri.005G024600 [exp] 67 / 1e-12 AT1G09140 258 / 6e-86 Serine/Arginine-Rich Protein Splicing Factor 30, SERINE-ARGININE PROTEIN 30 (.1.2) Potri.002G175000 [exp] 65 / 4e-12 AT3G61860 291 / 8e-100 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.005G097500 [exp] 65 / 1e-11 AT1G53720 667 / 0.0 cyclophilin 59 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003987 [exp] 303 / 5e-103 AT3G53500 255 / 2e-84 arginine/serine-rich zinc knuckle-containing protein 32, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) Lus10015039 [exp] 300 / 9e-102 AT3G53500 256 / 8e-85 arginine/serine-rich zinc knuckle-containing protein 32, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) Lus10025280 [exp] 223 / 3e-72 AT3G53500 184 / 2e-57 arginine/serine-rich zinc knuckle-containing protein 32, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) Lus10020656 [exp] 77 / 9e-16 AT1G02840 297 / 2e-100 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10029885 [exp] 77 / 2e-15 AT1G02840 253 / 2e-81 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10007869 [exp] 69 / 2e-13 AT1G02840 308 / 1e-105 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10008218 [exp] 69 / 3e-13 AT1G02840 228 / 3e-73 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10003606 [exp] 68 / 4e-13 AT1G02840 299 / 5e-102 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10030226 [exp] 64 / 8e-12 AT3G61860 320 / 8e-111 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10015564 [exp] 64 / 1e-11 AT3G49430 324 / 6e-112 Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0511 [poplar] [flax] Retroviral_zf PF00098 [poplar] [flax] zf-CCHC Zinc knuckle
Representative CDS sequence Show only first row Show all	>Potri.016G081700.1 pacid=42809158 polypeptide=Potri.016G081700.1.p locus=Potri.016G081700 ID=Potri.016G081700.1.v4.1 annot-version=v4.1 ATGCCACGTTATGATGACCGATATGCGAGTACGCGCCTCTATGTTGGCCACCTGGCTGCTAGGACACGATCACGGGATCTGGAACATCTTTTCAGCAAAT ATGGGCGAGTACGAGATGTGGATATGAAGCGTGACTATGCATTTGTTGAATTTAGTGATCCCAGAGATGCTGACGATGCAAGGCATTACTTAGATGGTAA GGATTTTGATGGAAGTCGTATCATCGTGGAATTTGCAAAGGGGGTACCTCGTGGTTCTCGAGAATACTTGGGCAGAGGTCCTCCTCCAGGATCTGGACGC TGCTTCAACTGTGGCATTGATGGTCACTGGGCTCGAGATTGCAAAGCTGGAGACTGGAAGAACAAGTGTTACCGTTGTGGGGAAAGAGGTCATATAGAGA GAAACTGCAAGAATAGCCCCAAGAAACTCACTAAGCGTGGGAGGAGTTACTCTCGATCACCAGATAGATCACCCTCTCCTCACCGTGGCAGAAGCCGTAG CCCAAGTTACAGCCGAGGCCGAAGCTACAGCCGATCAAGATCACCACCAAAGAGGGAGCGAAGTGCTGAGAATGAGAACAGGTCATTGAGCCCCGAGCCA AAGAATACCAAGGCAAGGAAGCGTAGCCCAACACCTGATGAAGGCAGCCCACGTCCTTCTCCTAAATCTCGGAAAATGGATGATGAACAGGATAGAGAGT ACAGTGGCAGCCCCAGGGGACGAAGCAGAAGCCCTCGAGGTGAGAGGTATAGAAGTCCTCCTCAGACTAATGGCCGCAGCCGCAGCCCTAGTCCAAGAGA TGATAGAAGTCCTGTTGATGATGATTATGAGGATAACAACCGCTCACCAAGAGATAGTGATGTGTCACGTTGA
AA sequence Show only first row Show all	>Potri.016G081700.1 pacid=42809158 polypeptide=Potri.016G081700.1.p locus=Potri.016G081700 ID=Potri.016G081700.1.v4.1 annot-version=v4.1 MPRYDDRYASTRLYVGHLAARTRSRDLEHLFSKYGRVRDVDMKRDYAFVEFSDPRDADDARHYLDGKDFDGSRIIVEFAKGVPRGSREYLGRGPPPGSGR CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCKNSPKKLTKRGRSYSRSPDRSPSPHRGRSRSPSYSRGRSYSRSRSPPKRERSAENENRSLSPEP KNTKARKRSPTPDEGSPRPSPKSRKMDDEQDREYSGSPRGRSRSPRGERYRSPPQTNGRSRSPSPRDDRSPVDDDYEDNNRSPRDSDVSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37340		RSZ33, ATRSZ33,...	arginine/serine-rich zinc knuc...		Potri.016G081700 [exp]	0	1
AT4G33400			Vacuolar import/degradation, V...		Potri.014G029600 [exp]	1.73	0.8251
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Potri.006G003800 [exp]	2.82	0.7835	Pt-CCSPK1.2
AT4G23860			PHD finger protein-related (.1...		Potri.003G140000 [exp]	3.87	0.8124
AT5G56740		HAG02, HAC7, HA...	histone acetyltransferase of t...		Potri.013G068200 [exp]	4.47	0.8140
AT4G29510		ATPRMT1B, ATPRM...	PROTEIN ARGININE METHYLTRANSFE...		Potri.006G149400 [exp]	6.48	0.7906
AT4G29510		ATPRMT1B, ATPRM...	PROTEIN ARGININE METHYLTRANSFE...		Potri.018G067200 [exp]	7.21	0.7994	PRMT901
AT1G26580			unknown protein		Potri.010G159700 [exp]	10.72	0.7981
AT1G02090		ATCSN7, COP15, ...	FUSCA 5, CONSTITUTIVE PHOTOMOR...		Potri.014G047200 [exp]	10.95	0.7561
AT5G02820		BIN5, RHL2	ROOT HAIRLESS 2, BRASSINOSTERO...		Potri.006G132600 [exp]	11.22	0.7971	Pt-RHL2.1
AT5G11860		SSP5	SCP1-like small phosphatase 5 ...		Potri.003G173700 [exp]	11.61	0.7518

Compare expression of checked genes

Potri.016G081700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.