Plant FIBer expression Database

Potri.016G081900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G53490 196 / 2e-63 unknown protein
AT5G02720 86 / 3e-21 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003989
[exp]
248 / 2e-83 AT3G53490 215 / 1e-70 unknown protein
Lus10015041
[exp]
149 / 9e-46 AT3G53490 116 / 2e-33 unknown protein
PFAM info
Representative CDS sequence
>Potri.016G081900.2 pacid=42809769 polypeptide=Potri.016G081900.2.p locus=Potri.016G081900 ID=Potri.016G081900.2.v4.1 annot-version=v4.1
ATGTCGATTTGTTGCCATCTTCAGATTTCTAGGGTTTCTTCAGCTACTTTTCTTGTCTCTTTGATTTTCCTCATCTACTTTCCAGGAATTGTATTACCCG
CTGTCGTAACATTGGATTCGATGAAAATATACCGAACACACGAGTGGTTAAATGTTGAACCAACAATATATTTCAGCTGTAAAGGAGAGAACCGAACAGC
ATTGCCTGATGTTAAACAAGTTAATGTCTCGTATACTTTTAAAGGCGAAGAATCATGGCAGCCTTTGACAGAGTTTACGAGCTTGAAATGCAAGAGATGT
GGATTTTATGAGAAGGATGACTTCAAGTCTGATGATGTTTTTGATGAGTGGGAGTTTTGTCCGTCGGATTTTGCGGGTTCCGATGGGAAAAATGAGCGAA
TTATTCACGGGGAATTTGATGCTACGTTTTTGTGTCCACAATGTGTGCCATTAGCAGCTGATTCCAACTCTGCCTCAAAGCCCCACAAAAAAGGGAACGA
AACGCATCTTGCTGTGGTCATATTGATCAGTGCTCTGGTTTCAACTGTGTTTGTTCTTGGAGTAGTAGCAGCATACAAGTACTGGCAAAAGAAGAAGAGG
GAGCAAGATCAAGCTCGGTTTCTGAAGCTGTTTGAAGATGGGGATGATATAGAGGATGAATTGGGGCTTGGCACTGTACTATGA
AA sequence
>Potri.016G081900.2 pacid=42809769 polypeptide=Potri.016G081900.2.p locus=Potri.016G081900 ID=Potri.016G081900.2.v4.1 annot-version=v4.1
MSICCHLQISRVSSATFLVSLIFLIYFPGIVLPAVVTLDSMKIYRTHEWLNVEPTIYFSCKGENRTALPDVKQVNVSYTFKGEESWQPLTEFTSLKCKRC
GFYEKDDFKSDDVFDEWEFCPSDFAGSDGKNERIIHGEFDATFLCPQCVPLAADSNSASKPHKKGNETHLAVVILISALVSTVFVLGVVAAYKYWQKKKR
EQDQARFLKLFEDGDDIEDELGLGTVL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G53490 unknown protein Potri.016G081900
[exp]
0 1
AT5G11680 unknown protein Potri.001G072600
[exp]
2.00 0.7655
AT1G17280 UBC34 ubiquitin-conjugating enzyme 3... Potri.001G162200
[exp]
2.44 0.6907
AT5G25760 PEX4, UBC21 ubiquitin-conjugating enzyme 2... Potri.006G240900
[exp]
6.48 0.6559
AT4G29160 SNF7.1 SNF7 family protein (.1.2.3) Potri.018G069900
[exp]
6.78 0.7017
AT3G51100 unknown protein Potri.005G117400
[exp]
7.21 0.6060
AT5G22950 VPS24.1 SNF7 family protein (.1) Potri.004G215500
[exp]
10.24 0.6627
AT3G13310 Chaperone DnaJ-domain superfam... Potri.001G469600
[exp]
10.53 0.5600
AT2G33700 Protein phosphatase 2C family ... Potri.002G007500
[exp]
15.16 0.6081
AT3G47670 Plant invertase/pectin methyle... Potri.001G108200
[exp]
15.90 0.6079
AT4G35860 ATGB2, AtRABB1b... GTP-binding 2 (.1.2) Potri.009G159600
[exp]
18.24 0.6276 Pt-ATGB2.1

Potri.016G081900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.