Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37320 601 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 315 / 2e-99 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G40720 316 / 3e-98 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G24000 307 / 1e-96 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G03880 306 / 1e-96 REME1 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G50270 305 / 1e-96 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G68930 305 / 2e-95 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G04780 298 / 8e-94 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G02980 298 / 9e-94 OTP85 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G27610 303 / 3e-93 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G047800 [exp] 355 / 2e-112 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 350 / 3e-112 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.007G104700 [exp] 327 / 8e-104 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G001200 [exp] 323 / 1e-103 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G012500 [exp] 323 / 3e-102 AT3G49710 995 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G208000 [exp] 320 / 2e-101 AT2G03880 939 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G006800 [exp] 319 / 4e-100 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.015G018700 [exp] 321 / 5e-100 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G241100 [exp] 311 / 1e-99 AT5G04780 572 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009070 [exp] 639 / 0 AT2G37320 515 / 2e-180 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025277 [exp] 628 / 0 AT2G37320 509 / 3e-178 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030581 [exp] 339 / 4e-104 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030908 [exp] 338 / 9e-104 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10015414 [exp] 330 / 7e-103 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 328 / 4e-102 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022890 [exp] 318 / 8e-100 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015898 [exp] 317 / 1e-99 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038741 [exp] 315 / 1e-99 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039117 [exp] 314 / 2e-99 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.016G082200.2 pacid=42809623 polypeptide=Potri.016G082200.2.p locus=Potri.016G082200 ID=Potri.016G082200.2.v4.1 annot-version=v4.1 ATGAATATTGTTTCTCTTCAGACACGATTGAGGAAGAAAATCCCTTATGCCACACACCTTTTCCAAACTCTATCACAGCATAGGCCTTTCTCTTCTCACA AATTCAGACGCACAACTCAGACCAAACGTTTAGACAAGGCACTCAGGATTCTAGACATTATAACCCCCAAAACAACCGCCCCAACAAATGGCCAGAACCA TCTTCGTGTCATTCAGGACTTCTTCCAAGCACATTCAAATAGAACCAGTGAACAACGTTTGAGCAACGATTTCATATCTCCGAACTCAGATAATGGAGAC TTCAGCGTGTTTGATGAAATTCTTGAATCTTCTTTTATAAACAATGATGAAGATTCTAATGCTACGAGCTTGAGTTTCGATGCGAGTGTTTTGTCGAATG CTGTGAGTTCTTGTGCGTCCACGCGGGATCTTCGCGGTGGGATTCAATATCATTGCTTGGCAATAAGTGCTGGCTTTATCGCCAATGCTTATATTGGAAG TTCTTTGGTTACTTTTTATGGCAAATGCGGTGAATTGGATAATGCTTACAAAGTGTTCAAAGAAATGCCTGTGAGAAATGTGGTGTCATGGACAGCCATC ATTTCTGGGTTTGCACAGGACTGGCAGGTTGATATGTGCTTACAGCTATATTGTTTAATGAGAAATTCAACACTGAAACCCAATGATTTCACATTTACTA GTCTTTTGAGTGCGTGCACTGGCAGTGGAGCTCTTGGGCAAGGTAGAAGTGCTCATTGTCAAATAATTGAAATGGGTTTTGTTTCATATTTGCATATAGC CAATGCTCTTGTATCAATGTACTGCAAGTGTGGGAACGTCGAGGATGCATTTCACATATTTGAGAACATGGTTGGCAAAGATATCGTATCATGGAATTCA ATGATTGCTGGCTATGCTCAACATGGGCTAGCAGTGCAGGGGATTGGGCTTTTTGAAAGGATGAAGAGTCAAGGGGTGAAACCTGATGCTATTACTTTTC TTGGTGTTTTATCTTCATGTAGACATGCAGGTTTTGTTGAAGGAGGAAGGAATTACTTCAATTCAATGGTTGAATATGGTGTGAAGCCAGAACTAGACCA CTATTCATGTATAGTCGATCTTCTTGGTCGTGCTGGATTACTGGAGGAGGCTCAATATTTTATTGAAAGGATGCCCGTATCTCCCAATGCTGTTATATGG GGTTCACTAGTATCTTCCTGCAGGCTTCATGGGAGTGTTTGGATTGGCATACAGGCTGCAGAGAACACGCTGTTGCTGGAACCAGAGTGCGCTGCTACCC ACGTGCAGTTGGCAAATTTGTATGCTAGTGTGGGATTCTGGGATCAGGCAGCTAGAGTGAGAAAATTGATGAAGGATAGAAGACTTAAAACAAATCCTGG CTGCAGCTGGATTGAGATCAAGAATGAGGTTTATAGATTTAGAGCAGAAGACTGTTCAAACACTAGAGTTAGTGAAATACATGATGTTTTGGACTGGCTG GTAGATCACATGATAACTTTAGGACGTGCGCCTGAAATGCAAGAGGTCAGTGAAGCTATACACGATAATGTGTGTCCATAA
AA sequence Show only first row Show all	>Potri.016G082200.2 pacid=42809623 polypeptide=Potri.016G082200.2.p locus=Potri.016G082200 ID=Potri.016G082200.2.v4.1 annot-version=v4.1 MNIVSLQTRLRKKIPYATHLFQTLSQHRPFSSHKFRRTTQTKRLDKALRILDIITPKTTAPTNGQNHLRVIQDFFQAHSNRTSEQRLSNDFISPNSDNGD FSVFDEILESSFINNDEDSNATSLSFDASVLSNAVSSCASTRDLRGGIQYHCLAISAGFIANAYIGSSLVTFYGKCGELDNAYKVFKEMPVRNVVSWTAI ISGFAQDWQVDMCLQLYCLMRNSTLKPNDFTFTSLLSACTGSGALGQGRSAHCQIIEMGFVSYLHIANALVSMYCKCGNVEDAFHIFENMVGKDIVSWNS MIAGYAQHGLAVQGIGLFERMKSQGVKPDAITFLGVLSSCRHAGFVEGGRNYFNSMVEYGVKPELDHYSCIVDLLGRAGLLEEAQYFIERMPVSPNAVIW GSLVSSCRLHGSVWIGIQAAENTLLLEPECAATHVQLANLYASVGFWDQAARVRKLMKDRRLKTNPGCSWIEIKNEVYRFRAEDCSNTRVSEIHDVLDWL VDHMITLGRAPEMQEVSEAIHDNVCP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37320			Tetratricopeptide repeat (TPR)...		Potri.016G082200 [exp]	0	1
AT2G36980			Tetratricopeptide repeat (TPR)...		Potri.010G020500 [exp]	2.44	0.8797
AT5G22330		ATTIP49A, RIN1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.004G199100 [exp]	2.64	0.8600
AT2G13600			Pentatricopeptide repeat (PPR)...		Potri.007G104700 [exp]	4.35	0.8431
AT3G50420			Pentatricopeptide repeat (PPR)...		Potri.005G131800 [exp]	5.38	0.8906
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.014G132100 [exp]	8.66	0.8776
AT4G21705			Tetratricopeptide repeat (TPR)...		Potri.011G120900 [exp]	12.00	0.8573
AT4G38010			Pentatricopeptide repeat (PPR-...		Potri.012G135600 [exp]	12.32	0.8191
AT1G28690			Tetratricopeptide repeat (TPR)...		Potri.004G054000 [exp]	12.48	0.8537
AT1G13410			Tetratricopeptide repeat (TPR)...		Potri.008G121400 [exp]	13.11	0.8706
AT3G12270		ATPRMT3	ARABIDOPSIS THALIANA PROTEIN A...		Potri.001G030200 [exp]	13.26	0.8538

Compare expression of checked genes

Potri.016G082200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.