Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45850 1107 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G28620 1001 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G37420 706 / 0 ATP binding microtubule motor family protein (.1) AT2G36200 675 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G60930 248 / 2e-67 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G47820 245 / 5e-67 FRA1 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G59540 238 / 1e-65 ZCF125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G22610 235 / 9e-64 Di-glucose binding protein with Kinesin motor domain (.1.2) AT3G12020 234 / 9e-64 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G50240 234 / 1e-63 KICP-02 ATP binding microtubule motor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G026000 [exp] 1142 / 0 AT3G45850 1520 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G233700 [exp] 1139 / 0 AT3G45850 1554 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G082900 [exp] 734 / 0 AT2G37420 1219 / 0.0 ATP binding microtubule motor family protein (.1) Potri.016G077800 [exp] 685 / 0 AT2G36200 1476 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G210700 [exp] 680 / 0 AT2G36200 1442 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G150800 [exp] 267 / 1e-73 AT5G60930 1386 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G106000 [exp] 251 / 1e-68 AT5G60930 1524 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G024700 [exp] 245 / 5e-67 AT5G47820 1580 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G123500 [exp] 242 / 4e-66 AT5G47820 1639 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009073 [exp] 1105 / 0 AT3G45850 1019 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10018120 [exp] 1089 / 0 AT3G45850 1583 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10036146 [exp] 1080 / 0 AT3G45850 1566 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10025275 [exp] 1050 / 0 AT3G45850 981 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10024429 [exp] 741 / 0 AT2G37420 1266 / 0.0 ATP binding microtubule motor family protein (.1) Lus10025304 [exp] 719 / 0 AT2G37420 1244 / 0.0 ATP binding microtubule motor family protein (.1) Lus10021340 [exp] 702 / 0 AT2G36200 1499 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10014216 [exp] 684 / 0 AT2G36200 1464 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10017016 [exp] 627 / 0 AT2G36200 1381 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10010047 [exp] 239 / 6e-65 AT5G47820 1569 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Potri.016G082400.4 pacid=42810327 polypeptide=Potri.016G082400.4.p locus=Potri.016G082400 ID=Potri.016G082400.4.v4.1 annot-version=v4.1 ATGGACTATTCGCAGTCGCAGCAGCAGAAGAGATGCGATACAGTCCTGCTCTCTCCAGCTCAAACTCCGCGATCTAGCGTGAGAAGGAGCTTGAGGGATT CGTTATCAATGGACCTGTGGAGTTCGAATATCAAGCCTGATAGAGGAGTCAATGTGGAGGTCATTCTGCGTTGCAGGCCATTAAATGACGACGAGAAGCA GCTAAAGTTACCTGTAGTGATTTCATGCAATGAGGGTAGAGGAGAAGTTTCTGTGGTCCAAAACACAGCTTATAAGCAGATAGATAAAACCTTTTCCTTT GACAAGGTTTTTGGTCCTACATCGCAGCAAAAAGAGCTGTTTGATGAAGCCATCTCTCCTATTGTGAATGAAGTTCTCGAGGGCTACAATTGCACTATCT TTGCATATGGTCAGACAGGAACGGGAAAAACTTACACAATGGAAGGCGGCAGAGTAGGAGAAGTAGAGAGTGGAGAATTTCCTAGTGATGTAGGAATAAT TCCAAGGGCAGTTCAGCAAATTCTTGATGTTCTTGAAGCTAGAAATGAGGAATATAGCATGAAAGTTACCTTTCTAGAGCTTTACAATGAAGACATAATG GACCTGCTTGCACCAGATGAAAGTTTAAATGGCCCGGATGACAAGTCCAGGAAGCCAATAGCCCTCATGGAAGATGGTAGAGGTGGTGTTTTTATAAGAG GTTTGGAGCAGGAAGTTGTTTGCACTGCAGATGGAATATATAAAATCTTGGAGAAAGGGTCAGCAAAACGGCACACTGCTGACTCTCTGCTCAATATGCA AAGCAGCCGCTCTCACACTATATTTTCCATCACTATTCATGTCAAAGAGAGTTCTTCCAATGGGGAGGAGCTAATGAAGTGCGGAAAACTTAATCTTGTT GATCTTGCTGGTTCTGAGAATGTAGTACGGTCTGGTGCAAAAGAGGGAAGAGTTAGGGAAGCTGGGGAGATCAATAAAAGCTTGCTTACGCTCGGTCGAG TTATTAATGCACTAGTTGAACACTCTGGACATGTTCCATACAGGGACAGTAAGTTAACAAGATTATTGAGAGATTCGCTTGGTGGGAATACAAAGACGTG CATAATTGCTACAGTATCACCATCTATCCATTCTTTGGAAGAGACACTCAACACTCTAGATTATGCTCATCGTGCCAAAAAAATCAAGAACAGACCAGAG GTCAATCAGAGGGTGGCCAAATCTGAGTTGATCAAGGATCTGTATAAAGAGATAGACCGCCATAGGCAAGAAATATATGCTGAAAGGGAGAAGAATGGCA TTTATATACCACACAACCGTTTCCAAAGTGAAGAAGCTGAGAGGAAGGCCTTGGTTGAGCAGATTAAGAGCATGGAATTTGACTTAGTATTTAAAGACAA GGAACTCATGGGGCTTCAGAAGCTTTATGATAAGCAGCAAACTTTGACAGCTGAATTAAGTGAAAAACTCCAAATGACACAAAAAGATTTTGAGAAAACT CAAAATACTTTGCTCGAAATAGAAGGCAGAAATAGAAAGGCAAATGCAATGATAAAAGAAAAGGAGCACTTGATTTCTCATCTTCTCCAATCCGAAAAAT CCCTTACAAAACAAGCATTGGAGCTGCGGGAAGAGCTGGAGCATGCAGCTTCTGAGGCATCCAACTTGTTTTCCAAACTTGAACTGCAGGATAAATTGGA AAATGGGAATAAAATTCTTGTCCAGAAATTCCAAACTCAATTAGCTCAGCAACTTGATGTTTTGCATCTAACTGTTGCAGCCTCCGTAACACAACAGGAG GAGCACCTGAAATCAATGGAAAAAGATTTCAATTACTCTCTGTCTAAAAAAATGGGGGGTATTCAAGAACTCACAACCCAAGTCAGACATCTAAAAAACA CGCATGAATCTAGCATTAAATCTTTGGATGATATATCTGAAGAGCTTGATATGAATTATCGATCAGCATTTTCAAATTTGACTTCAGAAGTGTCAAGGAA TTCTTCTGCTCTTGTTGGTCTTTTGGAAGAGAAGTTTCTGGAGATAAATGACATTCTTGATGATGTACAAAGGGATCTCTTTAATCAACAGGAAAAGCTT GCTGAATTTGCAGAACAGCAACGCCAGGGTCATTCCAAAACACTGCAGTTGACAAGATCCATGTCTGAAGCTATGATGAAGTTCTTTGAGACTTTAGGCA CACACACTTCTAGTTTGACCCGAATTATGGAAGGGACCCAAAAAATAAATGGACAGAAACTCTATGATCTTGCAAAGGAGTTTGAGGATTGCGCTGCTTT TGAGAAAAGGCAACTCTTGGAAAAAGTAGCTGAGCTTCTGGATATATCAAATGACAGGAAGAAAAACCTGGTTCAAACAGCAATTAATAGCCTTTTGGAG AGTACAGCCAGCAGAACCTGCAAGCTACAGAACGAGATGTCAAATCTGCAAGATTTTTCCTGTTCTGTTAAATCTGAATTGACAACTCACATGGAAACAA TAGCAACCAGCTATCTTGTTGCTACAGCTGTGATGGATAACGGAAAGGATGGTTTTGAAAAATGCCTTCAACAATGTATGTCAAAGGCAAGAATGGGTGT TTCTCAGTTAAGGAATGCCCAAGAATCAGTTCTTGATGTACAGAAAAGAAACGTTGGTTCTCTTGATTCCATTGCCAGGAATGAATTGGAAACCAGCGGC ATGATCCTATCAAAAGTTTCTTCTTTTGCTTTATCAGCACTTGAAGAAACTGGCATTGCATACAAGTCTCTTCTTTCCTCCATTGAGAATTTGTTGAAAC TAGATCATGACGCACATAAGAACATCCGTTCCGTTGCTGTTTCTTCTTTTGAAGATATGAAAGGATCGGGAAGCAATCACTACCACACAATTCTTAAGAT CAAGGAAGCTGGGCAATGTTTTCTGGATGAATACAAGGTGAATGAGCCTTACTGTTTGACACTTGAAAAGAGATCATCAAATACACCAAGCACAGAATCT ATTAAAGAACTCAGAAACCCAACATTTCAAAAGTTGTCAAGAACATTTTCAGGAGATTCATCAGTGCAGCAAGAATCTGAGGATCAAAATATTCTGTCAG ATGTCTGTGAGTCTGTTCGCCCCTTGAGTAATTCGAGAGTTACTCTCACAGCCATCAACTGA
AA sequence Show only first row Show all	>Potri.016G082400.4 pacid=42810327 polypeptide=Potri.016G082400.4.p locus=Potri.016G082400 ID=Potri.016G082400.4.v4.1 annot-version=v4.1 MDYSQSQQQKRCDTVLLSPAQTPRSSVRRSLRDSLSMDLWSSNIKPDRGVNVEVILRCRPLNDDEKQLKLPVVISCNEGRGEVSVVQNTAYKQIDKTFSF DKVFGPTSQQKELFDEAISPIVNEVLEGYNCTIFAYGQTGTGKTYTMEGGRVGEVESGEFPSDVGIIPRAVQQILDVLEARNEEYSMKVTFLELYNEDIM DLLAPDESLNGPDDKSRKPIALMEDGRGGVFIRGLEQEVVCTADGIYKILEKGSAKRHTADSLLNMQSSRSHTIFSITIHVKESSSNGEELMKCGKLNLV DLAGSENVVRSGAKEGRVREAGEINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGNTKTCIIATVSPSIHSLEETLNTLDYAHRAKKIKNRPE VNQRVAKSELIKDLYKEIDRHRQEIYAEREKNGIYIPHNRFQSEEAERKALVEQIKSMEFDLVFKDKELMGLQKLYDKQQTLTAELSEKLQMTQKDFEKT QNTLLEIEGRNRKANAMIKEKEHLISHLLQSEKSLTKQALELREELEHAASEASNLFSKLELQDKLENGNKILVQKFQTQLAQQLDVLHLTVAASVTQQE EHLKSMEKDFNYSLSKKMGGIQELTTQVRHLKNTHESSIKSLDDISEELDMNYRSAFSNLTSEVSRNSSALVGLLEEKFLEINDILDDVQRDLFNQQEKL AEFAEQQRQGHSKTLQLTRSMSEAMMKFFETLGTHTSSLTRIMEGTQKINGQKLYDLAKEFEDCAAFEKRQLLEKVAELLDISNDRKKNLVQTAINSLLE STASRTCKLQNEMSNLQDFSCSVKSELTTHMETIATSYLVATAVMDNGKDGFEKCLQQCMSKARMGVSQLRNAQESVLDVQKRNVGSLDSIARNELETSG MILSKVSSFALSALEETGIAYKSLLSSIENLLKLDHDAHKNIRSVAVSSFEDMKGSGSNHYHTILKIKEAGQCFLDEYKVNEPYCLTLEKRSSNTPSTES IKELRNPTFQKLSRTFSGDSSVQQESEDQNILSDVCESVRPLSNSRVTLTAIN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G45850			P-loop containing nucleoside t...		Potri.016G082400 [exp]	0	1
AT2G41830			Uncharacterized protein (.1)		Potri.006G052100 [exp]	4.35	0.8593
AT5G54530			Protein of unknown function, D...		Potri.011G129900 [exp]	4.89	0.8201
AT1G20670			DNA-binding bromodomain-contai...		Potri.006G112000 [exp]	6.32	0.8020	BRD919
AT1G03010			Phototropic-responsive NPH3 fa...		Potri.002G209700 [exp]	6.48	0.7903
AT2G15730			P-loop containing nucleoside t...		Potri.004G143300 [exp]	8.06	0.7913
AT3G07890			Ypt/Rab-GAP domain of gyp1p su...		Potri.002G218100 [exp]	8.94	0.7936
AT5G48740			Leucine-rich repeat protein ki...		Potri.002G242700 [exp]	12.40	0.8242
AT1G76620			Protein of unknown function, D...		Potri.002G001900 [exp]	13.85	0.7859
AT1G18670		IBS1	IMPAIRED IN BABA-INDUCED STERI...		Potri.012G067800 [exp]	16.24	0.8065
AT3G08490			unknown protein		Potri.001G267200 [exp]	19.26	0.8050

Compare expression of checked genes

Potri.016G082400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.