Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37300 71 / 1e-14 ABCI16 ATP-binding cassette I16, unknown protein AT3G52240 42 / 0.0008 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G216300 [exp] 264 / 2e-87 AT2G37300 56 / 2e-09 ATP-binding cassette I16, unknown protein Potri.008G025000 [exp] 45 / 6e-05 AT3G52240 198 / 2e-54 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025272 [exp] 94 / 6e-23 AT2G37300 69 / 7e-15 ATP-binding cassette I16, unknown protein Lus10009075 [exp] 87 / 2e-20 AT2G37300 68 / 9e-15 ATP-binding cassette I16, unknown protein Lus10034158 [exp] 49 / 4e-06 AT3G52240 148 / 3e-37 unknown protein Lus10043425 [exp] 48 / 1e-05 AT3G52240 167 / 9e-44 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.016G082700.3 pacid=42809863 polypeptide=Potri.016G082700.3.p locus=Potri.016G082700 ID=Potri.016G082700.3.v4.1 annot-version=v4.1 ATGACAGCTACTGGGAAGGATGGCAAAGTATGGAGTGTTCGTGAAAGCAAGAAAATGGAAGGAGAGGATAGTTTGAGGACTCTAGAATGCCTGAGAGGAA GGTTGCTTGCAGAGAGACAAGCTTCAAAGATTGCTAAAGAGGAGGCAGAGCTCATGGGCAATAAGTTAATAGAGCTAGAGGACAAACTCAGAGAAGAGAT CAAATTGAGGAAAAAAGCTGAAAAGAAGCATAAATTCTTGATGAAGAAGCTTGAGTCCTTGAAGATTTGGCCTGCATCAGAGGGATCAGAGAAGTCAAGT TCATCTGAGATTAGTGGATTTTGTAGCGCATCATCCACAAGTACTGCAGGCCACAAAGACCCCGAAGAATCTGAATCCAAGCCCCAAGTCATAATCACAG CAGACTCACAAGATATGAAAGACAATGGCTCTGAAACAACTACATCCAATCAAAATATTTGTCCTGTTTCCGATTCCATCGGAGAGACTCAAGATTCAAA TGCTGACAATAACCTCAAAGATTGTTCTTTAGATAAATCAAGGCATGAAACCGTTGCATGTTCACAAGATTCAAAGATTGATGATCAAAGTTCTGCGAGC ATTAAAGCATCAGTGGTGGAGATGGAGAAAAATGCAGGAAATGAGAGTGATAACGAGGCTTATGTGAATAATTCTTTGGCACTAGTCCCATTGAGTTTGC CAGCTTCTACCAAGAAAAGCACCCGAGGAGCATGGTCTTCTCCAATTTGCAAGTTCAACATCAGCCCAAGAAAAGAATCCAGTCTTTTTCTTTGGGTTGC GTCTAGTCGAAAACCAAGCCAACCTATTGACTGTGGTTCGAGTGTCATGAACCCAATACCCATGGAAGATTCAAGGATCAAAGTTCCAAGCACCCAGTTC TCAAAAACACATAATTACAAAGTGACAGGTACCAACCAAAGCTATGAAGTTGTTTTAAGGAAGATAGAATTCTACTTGGGTGAGAATAGATATAGTAATT TATCTGGAATAAGCTTGCTTTATTAA
AA sequence Show only first row Show all	>Potri.016G082700.3 pacid=42809863 polypeptide=Potri.016G082700.3.p locus=Potri.016G082700 ID=Potri.016G082700.3.v4.1 annot-version=v4.1 MTATGKDGKVWSVRESKKMEGEDSLRTLECLRGRLLAERQASKIAKEEAELMGNKLIELEDKLREEIKLRKKAEKKHKFLMKKLESLKIWPASEGSEKSS SSEISGFCSASSTSTAGHKDPEESESKPQVIITADSQDMKDNGSETTTSNQNICPVSDSIGETQDSNADNNLKDCSLDKSRHETVACSQDSKIDDQSSAS IKASVVEMEKNAGNESDNEAYVNNSLALVPLSLPASTKKSTRGAWSSPICKFNISPRKESSLFLWVASSRKPSQPIDCGSSVMNPIPMEDSRIKVPSTQF SKTHNYKVTGTNQSYEVVLRKIEFYLGENRYSNLSGISLLY

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37300		ABCI16	ATP-binding cassette I16, unkn...		Potri.016G082700 [exp]	0	1
AT4G28250		ATHEXPBETA1.6, ...	expansin B3 (.1.2)		Potri.013G134300 [exp]	5.91	0.8181	PtrEXPB3,Pt-EXPB1.3
AT4G26330		ATSBT3.18, UNE1...	UNFERTILIZED EMBRYO SAC 17, Su...		Potri.001G002200 [exp]	9.05	0.7806
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Potri.001G341600 [exp]	11.13	0.7387
AT5G04370		NAMT1	S-adenosyl-L-methionine-depend...		Potri.019G022200 [exp]	15.03	0.8276
AT2G42200	SBP	SPL9, AtSPL9	squamosa promoter binding prot...		Potri.016G048500 [exp]	18.70	0.7266
AT5G50570	SBP	SPL13, SPL13A	SQUAMOSA PROMOTER-BINDING PROT...		Potri.001G058600 [exp]	20.59	0.8200
AT3G05140		RBK2	ROP binding protein kinases 2 ...		Potri.013G028100 [exp]	22.04	0.8175
AT1G69560	MYB	LOF2, ATMYB105	LATERAL ORGAN FUSION 2, myb do...		Potri.008G088000 [exp]	22.53	0.8248
AT3G20820			Leucine-rich repeat (LRR) fami...		Potri.003G207000 [exp]	25.29	0.8146	Pt-PGI.2
AT3G11210			SGNH hydrolase-type esterase s...		Potri.010G189300 [exp]	28.77	0.7031

Compare expression of checked genes

Potri.016G082700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.