Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12620 503 / 3e-179 Protein phosphatase 2C family protein (.1.2) AT3G55050 473 / 1e-167 Protein phosphatase 2C family protein (.1.2) AT3G51370 472 / 2e-167 Protein phosphatase 2C family protein (.1.2) AT5G02760 466 / 3e-165 Protein phosphatase 2C family protein (.1) AT5G66080 459 / 4e-162 Protein phosphatase 2C family protein (.1) AT4G38520 456 / 6e-161 Protein phosphatase 2C family protein (.1.2) AT3G17090 368 / 2e-126 Protein phosphatase 2C family protein (.1.2) AT5G06750 357 / 6e-122 Protein phosphatase 2C family protein (.1.2.3) AT4G33920 345 / 2e-117 Protein phosphatase 2C family protein (.1) AT3G16560 126 / 3e-32 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G046900 [exp] 500 / 3e-178 AT3G12620 543 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.010G214700 [exp] 495 / 3e-176 AT3G12620 542 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.005G108500 [exp] 482 / 4e-171 AT3G51370 646 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.004G177100 [exp] 479 / 5e-170 AT4G38520 608 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.007G061100 [exp] 478 / 3e-169 AT3G51370 590 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.009G137400 [exp] 471 / 2e-166 AT4G38520 657 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.008G104300 [exp] 395 / 4e-137 AT3G17090 568 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.010G146700 [exp] 392 / 1e-135 AT3G17090 554 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.016G045600 [exp] 374 / 1e-128 AT5G06750 578 / 0.0 Protein phosphatase 2C family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023470 [exp] 501 / 2e-178 AT3G12620 612 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10015047 [exp] 497 / 4e-177 AT3G55050 476 / 7e-169 Protein phosphatase 2C family protein (.1.2) Lus10040346 [exp] 495 / 2e-176 AT3G12620 616 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10030302 [exp] 494 / 7e-176 AT3G12620 597 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10003993 [exp] 493 / 2e-175 AT3G12620 483 / 1e-171 Protein phosphatase 2C family protein (.1.2) Lus10014024 [exp] 477 / 1e-169 AT3G12620 476 / 1e-168 Protein phosphatase 2C family protein (.1.2) Lus10041861 [exp] 473 / 1e-167 AT3G51370 630 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10019893 [exp] 472 / 2e-167 AT3G12620 470 / 2e-166 Protein phosphatase 2C family protein (.1.2) Lus10027825 [exp] 464 / 1e-163 AT4G38520 586 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10005054 [exp] 458 / 2e-161 AT4G38520 582 / 0.0 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.016G082800.1 pacid=42810274 polypeptide=Potri.016G082800.1.p locus=Potri.016G082800 ID=Potri.016G082800.1.v4.1 annot-version=v4.1 ATGGTTAAACCTTGTTGGAGACCTTGTGTGGAGGATGATGCCACTGAGAAGGTTGATGGGTTGTTGTGGTACAAGAATTTGGGGAACCATGTTTATGGAG AGTTCTCGATGGCTGTAATTCAAGCCAATAGCTTGATGGAGGATCAAAGCCAACTTGAATCAGGGCCTTTGAGTTCAACTAATTCAGGTCCACAGGGGAC TTTTGTTGGAGTATATGATGGACATGGAGGAACTGAGGCTTCAAAGTTTATCAACCACAACGTTTTCTCCAATTTCAAAAAAATTGTTTCTGAGCAACAA GATGTATCGGAAATTACTATCAAGAAGGCTTTTGCATCTACAGAAGAGGGTTTTCTTTCACTTGTGAAAAAGCAGTGGCTTAGTAAGCCCCATATGGCAT CTGTTGGATCATGTTGTTTGGTGGGAGTCATATGCAATGGATTGTTATATATTGCAAATGCAGGAGACTCCCGAGTGGTTTTAGGAAGAGCAGAAAGAGG AACCAGGGAAGTTACAGCATTACAATTATCTACGGAGCACAATGCTAATATAGAAACTGTGAGAAATGAACTCCGGTGTCTGCATCCCAATGATTCACAG ATTGTTGTGCAGAAGCACAAAGTTTGGCGCGTGAAGGGCATCATACAGGTTTCAAGATCCATAGGAGATGCCTATCTTAAGAAGTCAGAGTTCAACCGAG AGCCTCTACAACCAAAGTTTAGACTGCCCGAACCTTTCCACAAGCCAATCCTAAATCCAGAGCCAGAAATACTAGTGCGCAAACTCCAACCAGGAGATCG ATTCCTCATATTTGCTTCTGATGGTCTATGGGAGCATCTTAGCAATCAGGAGGCTGTTGACATTGTCCAAAATTTCCCCCGGAAGGGAATTGCCAAGATG CTTGTCAAAGCTGCCCTTCGGAAAGCTGCAAAGAAAAGAGAGATGAGGTACACAGATTTGAAAAGGATTGAACGAGGCGTCCGGAGACATTTTCATGATG ATATTAGTGTCATAGTTGTGTATATAGATTCTCATTTGATCAGTAGAAGTTCCATCGGTGGCCATCCCTTATCGATAAGAGGAGGAAGCCACTATATCTG A
AA sequence Show only first row Show all	>Potri.016G082800.1 pacid=42810274 polypeptide=Potri.016G082800.1.p locus=Potri.016G082800 ID=Potri.016G082800.1.v4.1 annot-version=v4.1 MVKPCWRPCVEDDATEKVDGLLWYKNLGNHVYGEFSMAVIQANSLMEDQSQLESGPLSSTNSGPQGTFVGVYDGHGGTEASKFINHNVFSNFKKIVSEQQ DVSEITIKKAFASTEEGFLSLVKKQWLSKPHMASVGSCCLVGVICNGLLYIANAGDSRVVLGRAERGTREVTALQLSTEHNANIETVRNELRCLHPNDSQ IVVQKHKVWRVKGIIQVSRSIGDAYLKKSEFNREPLQPKFRLPEPFHKPILNPEPEILVRKLQPGDRFLIFASDGLWEHLSNQEAVDIVQNFPRKGIAKM LVKAALRKAAKKREMRYTDLKRIERGVRRHFHDDISVIVVYIDSHLISRSSIGGHPLSIRGGSHYI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G12620			Protein phosphatase 2C family ...		Potri.016G082800 [exp]	0	1
AT2G37900			Major facilitator superfamily ...		Potri.016G103500 [exp]	7.74	0.7279
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Potri.001G087100 [exp]	10.72	0.7544
AT3G22200		HER1, GABA-T, P...	POLLEN-PISTIL INCOMPATIBILITY ...		Potri.006G020900 [exp]	11.61	0.6940	POP2.2
AT4G14790		ATSUV3, EDA15	embryo sac development arrest ...		Potri.010G084100 [exp]	14.38	0.7265
AT1G11440			unknown protein		Potri.011G032700 [exp]	17.14	0.6946
AT2G17820		AHK1, ATHK1	histidine kinase 1 (.1)		Potri.007G056400 [exp]	20.37	0.7161	Pt-ATHK1.2
AT3G10250			Plant protein 1589 of unknown ...		Potri.016G038100 [exp]	20.39	0.7254
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Potri.018G027700 [exp]	25.09	0.6927
AT1G68740		PHO1;H1	EXS (ERD1/XPR1/SYG1) family pr...		Potri.010G132300 [exp]	33.46	0.6526
AT5G09540			Chaperone DnaJ-domain superfam...		Potri.007G114800 [exp]	41.84	0.6722

Compare expression of checked genes

Potri.016G082800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.