Plant FIBer expression Database

Potri.016G082900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G02770 118 / 3e-33 MOS11 modifier of snc1, 11, unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G134000
[exp]
246 / 1e-83 AT5G02770 114 / 1e-31 modifier of snc1, 11, unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014023
[exp]
132 / 2e-38 AT5G02770 134 / 3e-39 modifier of snc1, 11, unknown protein
Lus10019894
[exp]
129 / 2e-37 AT5G02770 142 / 2e-42 modifier of snc1, 11, unknown protein
PFAM info
Representative CDS sequence
>Potri.016G082900.1 pacid=42810373 polypeptide=Potri.016G082900.1.p locus=Potri.016G082900 ID=Potri.016G082900.1.v4.1 annot-version=v4.1
ATGGCAACCAAAACAGATAATCCTTCAACCGCCGCCGTTGAAGATAACCCTAGCGAAACCCTAGACACGGCAGTCCTTGATTCTACCAAGCCAGATCGAG
GCGAAGATTCTACCAACACCGCATCATCCACCGTTGAGTTAGCTACCGAAGGGCCTAAGAAGGACTCCGAGAACTCAAAGAGCGCTGCACCGGTCACCGA
CATCGAGAAGAAGATCCGCCGTGCTGAACGTTTTGGAATTACTGTTCAGCTTTCTGAGCAAGAGAAACGCAATTCTCGTGCTGAAAGGTTTGGCACTAGC
ACGGGCACGGGCACCGGCACCGGCTCTACAGCACAGGGGTCAGAGTCAGACTCGGTGAAGAAATCAGAGGAGCTAAAGAGGAAGGCTAGAGCAGAGAGGT
TTGGGATTCCTGTACCACCTGCAGCTAGTGATGAGGAGGCAAAGAAGAAATCTCGTCTTGAAAAATTCACACCGGCTGCTAAATCAAATACCCTGGAAGA
TGACAAAAGGAAGGCGAGGGCTCTCAGGTTCTCACAAAGTTCATCTGGTTCTCTATCCATAAATGGCAAGGGGGATCTTGAGCCAAAGGCAGCTATTGCA
GGTGAGGCTGGTGGAGGGTCTTGA
AA sequence
>Potri.016G082900.1 pacid=42810373 polypeptide=Potri.016G082900.1.p locus=Potri.016G082900 ID=Potri.016G082900.1.v4.1 annot-version=v4.1
MATKTDNPSTAAVEDNPSETLDTAVLDSTKPDRGEDSTNTASSTVELATEGPKKDSENSKSAAPVTDIEKKIRRAERFGITVQLSEQEKRNSRAERFGTS
TGTGTGTGSTAQGSESDSVKKSEELKRKARAERFGIPVPPAASDEEAKKKSRLEKFTPAAKSNTLEDDKRKARALRFSQSSSGSLSINGKGDLEPKAAIA
GEAGGGS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G02770 MOS11 modifier of snc1, 11, unknown ... Potri.016G082900
[exp]
0 1
AT2G27350 OTLD1 otubain-like deubiquitinase 1,... Potri.004G196800
[exp]
1.73 0.8742
AT3G17920 Outer arm dynein light chain 1... Potri.012G045300
[exp]
2.44 0.8554
AT4G03220 Protein with RNI-like/FBD-like... Potri.015G011200
[exp]
4.89 0.7908
AT4G21800 QQT2 quatre-quart2, P-loop containi... Potri.008G103000
[exp]
5.29 0.8404
AT3G02065 P-loop containing nucleoside t... Potri.014G140100
[exp]
5.74 0.8482
AT5G02770 MOS11 modifier of snc1, 11, unknown ... Potri.006G134000
[exp]
7.34 0.8157
AT5G06100 MYB ATMYB33 myb domain protein 33 (.1.2.3) Potri.003G189700
[exp]
7.74 0.8154
AT5G05550 Trihelix sequence-specific DNA binding ... Potri.008G071300
[exp]
9.16 0.8204
AT1G30480 DRT111 DNA-DAMAGE-REPAIR/TOLERATION P... Potri.011G098100
[exp]
9.48 0.8275 DRT111.1
AT5G05800 unknown protein Potri.001G268908
[exp]
9.79 0.8259

Potri.016G082900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.