Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07910 1597 / 0 ATRNL, RNL, AtRLG1 ARABIDOPSIS THALIANA RNA LIGASE, AtRLG1, RNAligase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017071 [exp] 1669 / 0 AT1G07910 1580 / 0.0 ARABIDOPSIS THALIANA RNA LIGASE, AtRLG1, RNAligase (.1.2) Lus10037788 [exp] 1659 / 0 AT1G07910 1586 / 0.0 ARABIDOPSIS THALIANA RNA LIGASE, AtRLG1, RNAligase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08302 [poplar] [flax] tRNA_lig_CPD Fungal tRNA ligase phosphodiesterase domain
Representative CDS sequence Show only first row Show all	>Potri.016G083100.6 pacid=42809694 polypeptide=Potri.016G083100.6.p locus=Potri.016G083100 ID=Potri.016G083100.6.v4.1 annot-version=v4.1 ATGAAGCAGAGGATCCTCTGCTCTCGCATTTTCACTCTCCCTTTTTATTCTACAAACTTCATTCCTGTTCGAGCCTCCATATCCATAGCTCGCCTTTTCA CTCTCCCTTCCCTTTCTCTTTCTCACCCCAATATAATCATGCCTCAGAGAGGACAACAAAAGTGTAAAGCCGAGGCAGATACCGATAAGGCGGCTTCTTC TTCATCGATGCCAAGTGCGGTGGCTGAAGCAGTCACTAACAGAATGGGTGGGTTGAGTATAATAGCTGAAAACGAAGTACATAAAACTATTTCGAAGCCT AAGTCTTATCAAACAATTGCCAATGCTGATGTTGAAAATGTGTCCGAAACAACTCCAAAAAGCAGTGCAAGTTTGAGCAAAATATTCAAGGGTAATTTGT TGGAGAATTTTACATTGGACGATTCGACCTATTCACTTGCTCAAATAAGAGCCACTTTCTATCCTAAATTTGAAAATGAAAAGTCTGATCAAGAGATTAG GGCCAGGATGATAGAGGTGGTGTCTAAAGGGTTGGGAACCTTGGAGGTAACTCTTAAACATTCTGGGTCACTTTTTATGTATGCGGGTCATGAAGGTGGA GCGTATGCCAAAAATAGTTTTGGGAATGTATACACTGCTGTTGGTGTCTTTGTTCTTGGACGGATGTTTCAAGAGGCATGGGGAACTGCAGCTGGAAAGA AGCAAGTGGAGTTCAATGATTTTCTTGAGATAAACCGCATGTGCATATCAATGGAACTAGTTACTGCTGTTCTAGGAGACCATGGGCAACGCCCTCGAGA AGATTATGTGGTGGTGACGGCAGTCACAGAACTGGGCAATGGAAAGCCAAAGTTCTACTCAACTCCTGAAGTGATTGCCTTTTGTCGGAAATGGCGCCTT CCAACAAATCATGTTTGGTTGTTCTCAACAAGGAAATCAGTGACATCCTTTTTTGCGGCCTATGATGCATTGTGTGAGGAAGGATTGGCAACAACTGTAT GTAGGGCTCTTGATGAAGTTGCTGATATATCTGTGCCAGGTTCAATAGACCATATAAAAGTGCAGGGTGAAATTTTGGAGGGTCTTGTGGCTCGTATTGT TGGTCATGAGAGCTCAAAGCACATGGAGGAGGTATTGAGAGAATATCCTCCTCCACCAGTTGAGGGAGCTGGCCTTGACCTGGGGCCAAGTCTAAGGGAA ATCTGTGCTGCAAATAGGTCAGATGAAAAACAGCAAATAAAAGCCCTCCTTCAGAGTGTTGGCTCTTCATTTTGCCCTAACTTTTCAGACTGGTTTGGGG TTGAATCTGGTGATAGTCATTCAAAAAATGCCGACAGATCTGTTGTCTCAAAATTTTTACAAGCTCACCCTTCTGATTTTTCTACCACAAAGTTGCAGGA AATGATTCGTTTGATGAGAGAAAGGCGTTTACCAGCTGCTTTTAAATGCTATCATAACTTCCACAAAATCGGTTCTGTATCTGTTGACAATCTTTTCTAT AAATTGGTCATTCATGTCCACAGTGACTCTGCTTTTCGGCGATATCAAAAAGAGATGAGGTACAAGCCGGGATTATGGCCATTATACCGAGGGTTTTTTG TTGACATTAACTTATTCAAGGCTAATAAGGAGAGAGCTGCTGAAATTGCAAAAAACAACAACATAGATGGAAATGTTAATGATAGAGCAAAAGATGGTTT AGCTGATGATGATGCAAATTTGATGATCAAACTGAAATTTCTTACATACAAGTTGAGAACCTTTTTGATCCGCAATGGCTTGTCAACTCTTTTCAAGGAT GGCCCATCTGCCTACAAGGCATACTATCTAAGGCAGATGAAAATCTGGGGAACTTCAGCAGGAAAACAGCAAGAACTCAGCAAGATGCTAGATGAATGGG CTGTACACATACGAAGAAAATGTGGAAAGAAGCAGTTGTCATCTTCAATATACCTGACTGAGGCTGAATCTTTCCTTGAACAATACGCAAGTCGAAGTCC AGAGAACCAAGTTTTGATAGGATCTGCTGGAAGCTTTGTTAGGGCGGAAGATTTCATGGCCATCATAGAAGGAGGTAGGGACGAAGAGGGTGATCTTGAG ATGGATAAGGAGGTGGTGTCCCCAAGTCCTATTTCCTCATTCAAGGAAACTGTTCAAAAGGATAAGGGTTTGATTGTCTTCTTTCCAGGAATTCCAGGAT GCGCTAAGTCTGTACTTTGCAAGGAATTACTAAATGCCCCTGGAGGTCTTGGAGATGATCGCCCGGTTCATAGTTTGATGGGTGACCTTATTAAAGGAAA GTACTGGCAGAAGATTGCTGATGAGCGGCGGAAAAAACCATACTCTGTAATACTTGCAGACAAAAATGCACCCAATGAAGAGGTTTGGAGACAGATCGAA GGCATGTGCCGGAGCACCCAAGCCTCTGCTGTTCCGGTCATACCTGATTCAGAAGGGACGGATTCAAATCCATTTTCTCTTGATGCATTAGCTGTTTTCA TGTTCCGTGTACTTCAACGTGTTAATCATCCGGGGAATTTGGACAAATCATCTCCAAATGCTGGTTTTGTGCTGCTTATGTTTTATCACCTTTATGATGG CAAGAACCGCACAGAGTTTGAGAGTGAACTAATAGAACGTTTTGGCTCTCTTGTCAAGATGCCATTGCTGAGACCAGATAGGAGTTCTCTGCCAGATCCA GTGAGATTGATTCTAGAAGAGGGGATAAATTTATACAGACTGCATACTAATGCACATGGAAGATTGGAATCCACCAAGGGTTCATATGGAAAGGAGTGGG TTAAGTGGGAGAAACAATTGCGTGAGGTTTTAATTGGTAGTGCTGAGCACCTGAATTCCATTCAGGTTCCATTTGAGTCTGCAGTAAAGCAAGTGTCAGA ACAGCTACAGAATATCATCAAGGGAGAATACACTCCACCGAGCACAGAGATGAGGAAACTTGGCACAATTATTTTTGCTGCTGTCAGTTTGCCTGCTACA GAAATCTCCAGTCTCCTAGATAAGTTGGTTGAGAACAACCCCAAGGTCAAAAGCTTTCTCAAGGACAAGGACATGGAACACAACTTGAAGAAGGCTCATC TCACTCTTGCCCACAAGCGAAGTCATGGCGTTACGGCTGTAGCTAGATATGGGCATTTACTCCATCAGAAGGTCCCTGTGGAATTGACTGCCCTTCTTTT CACTGATGAAATGGCTGCTCTAGAAGCGGAAGTTGGTTCTGTTGATGGCGAAAAAGTTATACCCAAAAATGAGTGGCCGCATGTTACCTTATGGACTGGA GAGAAAATTGCGGCCAAGGAGGCGAACAGATTGCCTCAATTGCTTCTGGAGGGGAAAGCAATTCGTATTGAAATCAATCCACCCATCATCATATCTGGTG AACTAGAATTTTATTGA
AA sequence Show only first row Show all	>Potri.016G083100.6 pacid=42809694 polypeptide=Potri.016G083100.6.p locus=Potri.016G083100 ID=Potri.016G083100.6.v4.1 annot-version=v4.1 MKQRILCSRIFTLPFYSTNFIPVRASISIARLFTLPSLSLSHPNIIMPQRGQQKCKAEADTDKAASSSSMPSAVAEAVTNRMGGLSIIAENEVHKTISKP KSYQTIANADVENVSETTPKSSASLSKIFKGNLLENFTLDDSTYSLAQIRATFYPKFENEKSDQEIRARMIEVVSKGLGTLEVTLKHSGSLFMYAGHEGG AYAKNSFGNVYTAVGVFVLGRMFQEAWGTAAGKKQVEFNDFLEINRMCISMELVTAVLGDHGQRPREDYVVVTAVTELGNGKPKFYSTPEVIAFCRKWRL PTNHVWLFSTRKSVTSFFAAYDALCEEGLATTVCRALDEVADISVPGSIDHIKVQGEILEGLVARIVGHESSKHMEEVLREYPPPPVEGAGLDLGPSLRE ICAANRSDEKQQIKALLQSVGSSFCPNFSDWFGVESGDSHSKNADRSVVSKFLQAHPSDFSTTKLQEMIRLMRERRLPAAFKCYHNFHKIGSVSVDNLFY KLVIHVHSDSAFRRYQKEMRYKPGLWPLYRGFFVDINLFKANKERAAEIAKNNNIDGNVNDRAKDGLADDDANLMIKLKFLTYKLRTFLIRNGLSTLFKD GPSAYKAYYLRQMKIWGTSAGKQQELSKMLDEWAVHIRRKCGKKQLSSSIYLTEAESFLEQYASRSPENQVLIGSAGSFVRAEDFMAIIEGGRDEEGDLE MDKEVVSPSPISSFKETVQKDKGLIVFFPGIPGCAKSVLCKELLNAPGGLGDDRPVHSLMGDLIKGKYWQKIADERRKKPYSVILADKNAPNEEVWRQIE GMCRSTQASAVPVIPDSEGTDSNPFSLDALAVFMFRVLQRVNHPGNLDKSSPNAGFVLLMFYHLYDGKNRTEFESELIERFGSLVKMPLLRPDRSSLPDP VRLILEEGINLYRLHTNAHGRLESTKGSYGKEWVKWEKQLREVLIGSAEHLNSIQVPFESAVKQVSEQLQNIIKGEYTPPSTEMRKLGTIIFAAVSLPAT EISSLLDKLVENNPKVKSFLKDKDMEHNLKKAHLTLAHKRSHGVTAVARYGHLLHQKVPVELTALLFTDEMAALEAEVGSVDGEKVIPKNEWPHVTLWTG EKIAAKEANRLPQLLLEGKAIRIEINPPIIISGELEFY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07910		ATRNL, RNL, AtR...	ARABIDOPSIS THALIANA RNA LIGAS...		Potri.016G083100 [exp]	0	1
AT1G04080		PRP39	Tetratricopeptide repeat (TPR)...		Potri.014G192800 [exp]	7.21	0.7346
AT4G25610	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.012G143200 [exp]	7.34	0.6762
AT1G15780			unknown protein		Potri.003G014156 [exp]	7.48	0.7083
AT5G66030		ATGRIP, GRIP	Golgi-localized GRIP domain-co...		Potri.005G099800 [exp]	13.78	0.7067
AT1G20760			Calcium-binding EF hand family...		Potri.007G063200 [exp]	14.89	0.7289
AT4G34310			alpha/beta-Hydrolases superfam...		Potri.002G128201 [exp]	16.94	0.6320
AT4G07990			Chaperone DnaJ-domain superfam...		Potri.005G146600 [exp]	19.77	0.6641
AT1G03190		ATXPD, UVH6	ULTRAVIOLET HYPERSENSITIVE 6, ...		Potri.002G054000 [exp]	21.16	0.6415	Pt-UVH6.1
AT5G45760			Transducin/WD40 repeat-like su...		Potri.011G069700 [exp]	27.22	0.6255
AT1G30970	C2H2ZnF	SUF4	suppressor of FRIGIDA4, zinc f...		Potri.003G074200 [exp]	28.35	0.6997

Compare expression of checked genes

Potri.016G083100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.