Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RPL4.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09630 585 / 0 Ribosomal protein L4/L1 family (.1.2) AT5G02870 576 / 0 Ribosomal protein L4/L1 family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G132450 [exp] 645 / 0 AT3G09630 617 / 0.0 Ribosomal protein L4/L1 family (.1.2) Potri.006G132551 [exp] 638 / 0 AT3G09630 612 / 0.0 Ribosomal protein L4/L1 family (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026476 [exp] 607 / 0 AT3G09630 678 / 0.0 Ribosomal protein L4/L1 family (.1.2) Lus10019903 [exp] 601 / 0 AT3G09630 674 / 0.0 Ribosomal protein L4/L1 family (.1.2) Lus10014014 [exp] 432 / 9e-152 AT3G09630 510 / 0.0 Ribosomal protein L4/L1 family (.1.2) Lus10019904 [exp] 410 / 2e-142 AT3G09630 488 / 3e-173 Ribosomal protein L4/L1 family (.1.2) Lus10014430 [exp] 105 / 4e-28 AT5G02870 103 / 7e-28 Ribosomal protein L4/L1 family (.1.2) Lus10014431 [exp] 101 / 7e-26 AT3G09630 175 / 1e-54 Ribosomal protein L4/L1 family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00573 [poplar] [flax] Ribosomal_L4 Ribosomal protein L4/L1 family PF14374 [poplar] [flax] Ribos_L4_asso_C 60S ribosomal protein L4 C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.016G084400.1 pacid=42810127 polypeptide=Potri.016G084400.1.p locus=Potri.016G084400 ID=Potri.016G084400.1.v4.1 annot-version=v4.1 ATGGCCGCCGCCGCACGCCCCCTGGTCTCTGTTCAAACCCTCCCCTGCCTCAACGACATGGTCACGGATTCGGCTGCCACCGTGGCTCTCCCCGATGTCA TGAAGGCCTCGATCCGACCAGACATCGTCAACTACGTCCACTCAAACATCTCCAAGAATAGCCGCCAGCCTTATGCCGTCTCCAAGAAAGCCGGTCACCA GACCTCAGCCGAATCATGGGGTACTGGTCGTGCCGTTTCTCGTATCCCCCGTGTTCCTGGTGGTGGAACTCACCGTGCTGGTCAGGGAGCTTACGGAAAT ATGTGCCGTGGTGGACGCATGTTTGCTCCCACCAAGATCTGGCGCCGCTGGCATAGGAAGATTAATGTGAACCAAAAGAGATACGCTGTCGTTTCAGCTA TTGCTGCATCTGCTATACCCTCTCTGGTGATGGCACGTGGTCACCGCGTGGAGTCAGTCCCCGAGATGCCTTTGATTATCTCCGACTCAGCCGAGAGCAT TGAAAAGACATCTACTGCTATTAAGGTGCTCAAGGAGATCGGTGCTTTTCCAGATGCTGAGAAAGCTAAGGATTCTCACGCGATCCGGCCTGGAAAGGGG AAAATGAGGAACAGGAGGTATATTTCTCGCAAGGGACCCCTGATTGTTTATGGAACCGAAGGTGCTAAGATGGTTAAGGCCTTCCGTAATATTCCAGGAG TGGAGGTTGCTAACGTTGAGAGGTTGAACTTGTTGAAGTTGGCTCCTGGTGGTCATCTTGGAAGGTTTGTGATCTGGACGAAATCAGCTATTGAGAAGCT TGATTCAATTTATGGTTCATTTGAGAAGTGTTCAGAGAAGAAGAAGGGGTATGTGCTGCCTAGGTCCAAGATGGTCAATGCTGATTTGGCTAGGATCATC AACTCTGATGAGGTTCAGAGTGTTGTGAAGCCAATCAAGAGGGAGGTTAAGAGGGCTACTTTGAAGAAGAACCCATTGAAGAACTTGAATGTGTTGTTGA AATTGAACCCATATGCTAAGACTGCTAGGAGGATGGCTCTTTTGGCCGAGGCAGAGCGTGTGAAGTCTAAGAAGGAGAAGCTCGACAGGAAGAGGAAGCC TGTCTCAAAGGAGGAGCTAGCCGCTGCCAAGGCTGCAGGAAAGGCATGGTACAAGACAATGATCTCAGACAGCGATTACACAGAGTTTGAGAATTTCACA AAGTGGCTTGGTGTCTCTCAGTAA
AA sequence Show only first row Show all	>Potri.016G084400.1 pacid=42810127 polypeptide=Potri.016G084400.1.p locus=Potri.016G084400 ID=Potri.016G084400.1.v4.1 annot-version=v4.1 MAAAARPLVSVQTLPCLNDMVTDSAATVALPDVMKASIRPDIVNYVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAYGN MCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAIAASAIPSLVMARGHRVESVPEMPLIISDSAESIEKTSTAIKVLKEIGAFPDAEKAKDSHAIRPGKG KMRNRRYISRKGPLIVYGTEGAKMVKAFRNIPGVEVANVERLNLLKLAPGGHLGRFVIWTKSAIEKLDSIYGSFEKCSEKKKGYVLPRSKMVNADLARII NSDEVQSVVKPIKREVKRATLKKNPLKNLNVLLKLNPYAKTARRMALLAEAERVKSKKEKLDRKRKPVSKEELAAAKAAGKAWYKTMISDSDYTEFENFT KWLGVSQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G09630			Ribosomal protein L4/L1 family...		Potri.016G084400 [exp]	0	1	Pt-RPL4.2
AT1G18080		RACK1A_AT, ATAR...	RECEPTOR FOR ACTIVATED C KINAS...		Potri.015G041600 [exp]	1.41	0.9654	Pt-GBF1.2
AT1G27400			Ribosomal protein L22p/L17e fa...		Potri.012G096600 [exp]	2.00	0.9652	Pt-RPL17.1
AT2G41840			Ribosomal protein S5 family pr...		Potri.016G055000 [exp]	3.00	0.9587	Pt-RPS2.3
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Potri.001G453900 [exp]	5.91	0.9568
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Potri.001G454000 [exp]	6.00	0.9578
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Potri.004G113900 [exp]	6.00	0.9511
AT5G60390			GTP binding Elongation factor ...		Potri.008G042500 [exp]	6.92	0.9566	ADR12.1
AT2G40010			Ribosomal protein L10 family p...		Potri.008G066300 [exp]	7.74	0.9383
AT1G04170		EIF2 GAMMA, EIF...	eukaryotic translation initiat...		Potri.001G129100 [exp]	8.30	0.9017	EIF2.5
AT3G20000		TOM40	translocase of the outer mitoc...		Potri.014G004100 [exp]	9.16	0.9427

Compare expression of checked genes

Potri.016G084400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.