Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37050 1276 / 0 Leucine-rich repeat protein kinase family protein (.1.2.3) AT1G67720 781 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G51880 432 / 4e-137 RHS6 root hair specific 6 (.1) AT1G51860 419 / 2e-132 Leucine-rich repeat protein kinase family protein (.1) AT2G29000 414 / 9e-131 Leucine-rich repeat protein kinase family protein (.1) AT5G59670 409 / 1e-128 Leucine-rich repeat protein kinase family protein (.1) AT2G14510 408 / 2e-128 Leucine-rich repeat protein kinase family protein (.1) AT1G51800 407 / 1e-127 IOS1 IMPAIRED OOMYCETE SUSCEPTIBILITY 1, Leucine-rich repeat protein kinase family protein (.1) AT2G28990 406 / 2e-127 Leucine-rich repeat protein kinase family protein (.1) AT2G14440 406 / 2e-127 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G132100 [exp] 1606 / 0 AT2G37050 1317 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.010G052800 [exp] 815 / 0 AT1G67720 1330 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G181200 [exp] 813 / 0 AT1G67720 1339 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G094600 [exp] 390 / 3e-121 AT4G29990 636 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.002G242700 [exp] 387 / 8e-120 AT5G48740 1110 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G004700 [exp] 387 / 1e-119 AT2G37050 466 / 2e-149 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.019G094300 [exp] 386 / 1e-119 AT4G29990 628 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094700 [exp] 371 / 5e-114 AT4G29990 652 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094200 [exp] 338 / 4e-106 AT4G29990 452 / 1e-150 Leucine-rich repeat transmembrane protein kinase protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019907 [exp] 1376 / 0 AT2G37050 1337 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10023166 [exp] 1361 / 0 AT2G37050 1323 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10015057 [exp] 1348 / 0 AT2G37050 1316 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10036935 [exp] 779 / 0 AT1G67720 1303 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037051 [exp] 774 / 0 AT1G67720 1293 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025849 [exp] 392 / 4e-122 AT4G29990 803 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Lus10019237 [exp] 359 / 3e-109 AT2G37050 464 / 1e-148 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10038172 [exp] 334 / 1e-100 AT5G48740 967 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038174 [exp] 300 / 9e-91 AT5G48740 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025926 [exp] 306 / 6e-90 AT5G48740 1094 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0202 [poplar] [flax] GBD PF12819 [poplar] [flax] Malectin_like Malectin-like domain
Representative CDS sequence Show only first row Show all	>Potri.016G084900.1 pacid=42809237 polypeptide=Potri.016G084900.1.p locus=Potri.016G084900 ID=Potri.016G084900.1.v4.1 annot-version=v4.1 ATGGGGTCTTGGCTTCTGCTTCTTTTCTCTCTTCTTCTTTTCTTTCACGCCTCCTCTGCTCAACCGGGTTTTCTGAGTTTGGACTGTGGTGGCCCAGCAA ACTTCACTGATGCACTTGGACTATCATGGACTTCGGATGTTAATTTTATTTACGGAGAAGCAGCAAGCATATCAGTTGCAAATGAGACACGGAAGCAATA CACTACAGTGAGACATTTCCCTGCAGATACCAGGAAGTACTGTTATAGATTGGATGTTACAAGTAGGACAAGATACCTTTTAAGGGCAACATTCTTGTAT GGTGACTTTGACAACAATAATGTCTATCCAAAATTTGACATATCTGTTGGGCCAACTCATTGGTCTACCATTGTCATTTCTGATGCTAATACCATAGAAT CTATAGAGCTAATATTTCTGGCTTCAAGTTCTTCTATCAGTGTATGCCTATCCAATGCTACAACTGGGCAGCCGTTCATATCTACCCTTGAGCTCCGACA ATTCAATGGTTCAGTTTATTTTACAGCATTTGAAAACCAGTTTTTTCTCAGCGTGTCTGCCAGAATCAATTTTGGTGCCGACAGTGTGGATCCAGTTAGG TATCCTGATGACCCTTATGATAGAATATGGGAGTCAGACTCTGTGAAGAAAGCGAATTATCTAGTTGATGTTGCTGCTGGTACCAAGAAAGTTTCAACTG ACATGCCAATCAACGTCAACATTGATGAAAGGCCTCCTGAGAAAGTGATGCAAACAGCTGTAGTTGGCACAAATGGGTCGCTCACTTATCGGTTGAATTT GGATGGTTTTCCTGGTTTTGGGTGGGCTTGCACATACTTCGCTGAAATTGAAGATCTGGATCCCACTGAGTCCAGAAAATTCAGGCTGGTACTCCCAGGG AACCCTGATATGAGCAAAGCTGTTGTCAATATCGAAGAAAATGCTCAAGGAAAATACCGTCTCTATGAACCTGGATATACCAACCTATCCCTACCCTTCG TATTATCTTTTAGATTTGGAAAGACTTCTGATTCTTCCAGGGGACCACTTCTGAATGCTATGGAGATAAACAAGTATCTTGAGAAAAATGATGGTTCTCT AGATGGAGATGTTATTTCTGGTGTGATTTTACTCTACTCAACAGCAGATTGGGCACAAGAAGGTGGTGACCCATGCATGCCAGTTCCATGGTCATGGGTG CAGTGCAACTCTGAAGCTAGGCCAAGGATTGTTAAGCTCTCATTGTCTAGCAAGAATTTGTCTGGGAGTGTTCCTTCAGACTTGACGAAGCTGACAGGTT TAGTTGAATTATGGCTCGATGGAAATTCATTAACTGGTCCAATTCCTGATTTTACTGGATGCACAGACTTGGAGATCATTCATCTTGAGAACAATCAGTT GACGGGTGAGCTGCCATCCTCCTTGCTGAACCTACCAAATTTGAGGGAACTGTATGTGCAAAATAATATGTTATCCGGAACAATACCATCGGGTCTCGGT AGAAAGGTGGTTTTGAACTACTCTGGAAACATAAATCTTCATGAAGGAGCCAGAAGAGGGAGGCACATGGGTATTATTATCGGTTCGTCAGTTGGAGCTG CTGTTCTTCTGATAACTACATTAGTGTCTTGCATGTTCATGCAAAAAGGAAAGAAAAGACACCCTGACCAAGAACAACTTCGGGATTCCCTGCCTGTGCA AAGGGTAGTTTCTACCTTGAGTAATGCTCCTGGAGAAGCTGCTCACCGTTTCACATCCTTTGAGATTGAAGATGCTACAAAAAAATTTGAGAAGAAAATA GGCTCTGGAGGTTTTGGAGTTGTGTACTATGGAAAAATGAAAGATGGAAGGGAAATTGCAGTGAAAGTTCTAACTAGCAATTCCTTCCAGGGAAAGCGAG AGTTTTCAAATGAGGTGAGTCTTCTTTCAAGGATACATCACAGAAACCTGGTACAGTTTCTTGGATTTTGTCAAGAAGTTGGGAAGAGTATGCTTGTTTA TGAGTTCATGCACAATGGAACACTTAAGGAACATCTTTACGGTCCTTTAAAACAAGGAAGAAGTATTAGTTGGATCAAGCGCCTTGAGATAGCTGAAGAT GCCGCAAAAGGGATTGAATATCTTCATACAGGCTGTGTTCCAGCCATTATACATAGGGATTTAAAAACCAGCAATATTCTTCTTGACAAAAACATGAGAG CGAAGGTTGCGGATTTTGGCCTTTCAAAACTTGCAGTAGATGGAGCTTCACATGTCTCAAGCATAGTTCGAGGCACCGTAGGGTATTTGGATCCCGAGTA TTACATCTCGCAACAGTTAACGAACAAGAGCGATGTTTATAGTTTTGGTGTCATTCTCCTGGAGCTGATGTCTGGTCAAGAAGCCATATCTAACGAGAGC TTTGGTGTAAATTGTCGCAATATAGTACAATGGGCAAAATTACACATTGAGAGTGGGGATATCCAAGGAATCATTGATCCCTCGCTATGTAATGAATTTG ACATCCAGTCAATGTGGAAGATAGCAGAGAAAGCTTTGACGTGTGTCCAGCCTCATGGTCACATGAGGCCATCTATTTCGGAAGTTCTCAAGGAGATCCA GGATGCTATCTTAATTGAAAGGGAGGTGACAGCAGCAAGAGGTTTCTCTGATGAAATGTCCAGAAATTCTGTTCAGTCTTCATTCAACCTGGGTTCTTTG GATTTGGGTGGAACTGAGAATTGCCTGGCGCTTGACGAGTCCATTGCGCGGCCAACCGCCAGATAA
AA sequence Show only first row Show all	>Potri.016G084900.1 pacid=42809237 polypeptide=Potri.016G084900.1.p locus=Potri.016G084900 ID=Potri.016G084900.1.v4.1 annot-version=v4.1 MGSWLLLLFSLLLFFHASSAQPGFLSLDCGGPANFTDALGLSWTSDVNFIYGEAASISVANETRKQYTTVRHFPADTRKYCYRLDVTSRTRYLLRATFLY GDFDNNNVYPKFDISVGPTHWSTIVISDANTIESIELIFLASSSSISVCLSNATTGQPFISTLELRQFNGSVYFTAFENQFFLSVSARINFGADSVDPVR YPDDPYDRIWESDSVKKANYLVDVAAGTKKVSTDMPINVNIDERPPEKVMQTAVVGTNGSLTYRLNLDGFPGFGWACTYFAEIEDLDPTESRKFRLVLPG NPDMSKAVVNIEENAQGKYRLYEPGYTNLSLPFVLSFRFGKTSDSSRGPLLNAMEINKYLEKNDGSLDGDVISGVILLYSTADWAQEGGDPCMPVPWSWV QCNSEARPRIVKLSLSSKNLSGSVPSDLTKLTGLVELWLDGNSLTGPIPDFTGCTDLEIIHLENNQLTGELPSSLLNLPNLRELYVQNNMLSGTIPSGLG RKVVLNYSGNINLHEGARRGRHMGIIIGSSVGAAVLLITTLVSCMFMQKGKKRHPDQEQLRDSLPVQRVVSTLSNAPGEAAHRFTSFEIEDATKKFEKKI GSGGFGVVYYGKMKDGREIAVKVLTSNSFQGKREFSNEVSLLSRIHHRNLVQFLGFCQEVGKSMLVYEFMHNGTLKEHLYGPLKQGRSISWIKRLEIAED AAKGIEYLHTGCVPAIIHRDLKTSNILLDKNMRAKVADFGLSKLAVDGASHVSSIVRGTVGYLDPEYYISQQLTNKSDVYSFGVILLELMSGQEAISNES FGVNCRNIVQWAKLHIESGDIQGIIDPSLCNEFDIQSMWKIAEKALTCVQPHGHMRPSISEVLKEIQDAILIEREVTAARGFSDEMSRNSVQSSFNLGSL DLGGTENCLALDESIARPTAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37050			Leucine-rich repeat protein ki...		Potri.016G084900 [exp]	0	1
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Potri.003G163600 [exp]	5.56	0.7600
AT1G21410		SKP2A	F-box/RNI-like superfamily pro...		Potri.002G074700 [exp]	10.00	0.6937
AT4G27190			NB-ARC domain-containing disea...		Potri.001G422800 [exp]	20.12	0.6937	Pt-RGA-II24.59
AT5G35330		MBD2, MBD02, AT...	METHYL-CPG-BINDING DOMAIN PROT...		Potri.018G146700 [exp]	20.73	0.6584
AT2G47070	SBP	SPL1	squamosa promoter binding prot...		Potri.010G154000 [exp]	21.81	0.7381	Pt-SPL1.4
AT1G14790		ATRDRP1, RDR1	RNA-dependent RNA polymerase 1...		Potri.008G136100 [exp]	29.24	0.7168	RDR902,Pt-RDRP.1
AT5G38470		RAD23D	RADIATION SENSITIVE23D, Rad23 ...		Potri.008G119700 [exp]	32.46	0.6705
AT3G48530		KING1	SNF1-related protein kinase re...		Potri.015G094700 [exp]	38.10	0.6574
AT1G59580		ATMPK2	mitogen-activated protein kina...		Potri.005G231100 [exp]	38.34	0.6812	Pt-MPK1.3
AT3G42670		CLSY1, CLSY, CH...	CLASSY 1, CLASSY1, chromatin r...		Potri.008G073500 [exp]	40.32	0.7106

Compare expression of checked genes

Potri.016G084900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.