Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02880 1634 / 0 UPL4 ubiquitin-protein ligase 4 (.1) AT4G38600 596 / 0 UPL3, KAK UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) AT3G17205 139 / 5e-33 UPL6 ubiquitin protein ligase 6 (.1.2.3) AT1G55860 118 / 3e-26 UPL1 ubiquitin-protein ligase 1 (.1.2) AT1G70320 118 / 4e-26 UPL2 ubiquitin-protein ligase 2 (.1) AT3G53090 113 / 8e-25 UPL7 ubiquitin-protein ligase 7 (.1.2) AT5G49310 57 / 1e-07 IMPA-5 importin alpha isoform 5 (.1) AT3G06720 56 / 2e-07 IMPA1, IMPA-1, AIMPALPHA, ATKAPALPHA, AT-IMP importin alpha isoform 1 (.1.2) AT4G16143 55 / 3e-07 IMPA-2 importin alpha isoform 2 (.1.2) AT4G02150 51 / 5e-06 IMPA-3, MOS6, ATIMPALPHA3 MODIFIER OF SNC1, 6, IMPORTIN ALPHA ISOFORM 3, IMPORTIN ALPHA 3, ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G132000 [exp] 2729 / 0 AT5G02880 1614 / 0.0 ubiquitin-protein ligase 4 (.1) Potri.004G174700 [exp] 613 / 0 AT4G38600 2241 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) Potri.009G134300 [exp] 601 / 0 AT4G38600 2234 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) Potri.010G150000 [exp] 137 / 2e-32 AT3G17205 1506 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Potri.008G101300 [exp] 124 / 4e-28 AT3G17205 1432 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Potri.001G368600 [exp] 113 / 1e-24 AT1G55860 4297 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.011G094100 [exp] 110 / 8e-24 AT1G55860 4187 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.002G110500 [exp] 110 / 1e-23 AT1G55860 1125 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.016G096500 [exp] 105 / 1e-22 AT3G53090 1447 / 0.0 ubiquitin-protein ligase 7 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019908 [exp] 1983 / 0 AT4G38600 1545 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) Lus10027841 [exp] 613 / 0 AT4G38600 2482 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) Lus10005068 [exp] 591 / 0 AT4G38600 2305 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) Lus10032589 [exp] 112 / 2e-24 AT1G55860 4402 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10002605 [exp] 111 / 4e-24 AT1G55860 1128 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10032830 [exp] 110 / 7e-24 AT1G55860 1189 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10035589 [exp] 99 / 2e-20 AT3G53090 1385 / 0.0 ubiquitin-protein ligase 7 (.1.2) Lus10008636 [exp] 82 / 5e-15 AT3G53090 1270 / 0.0 ubiquitin-protein ligase 7 (.1.2) Lus10017098 [exp] 81 / 8e-15 AT3G17205 1249 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Lus10037820 [exp] 79 / 2e-14 AT3G17205 1099 / 0.0 ubiquitin protein ligase 6 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0552 [poplar] [flax] Hect PF00632 [poplar] [flax] HECT HECT-domain (ubiquitin-transferase)
Representative CDS sequence Show only first row Show all	>Potri.016G085200.4 pacid=42809346 polypeptide=Potri.016G085200.4.p locus=Potri.016G085200 ID=Potri.016G085200.4.v4.1 annot-version=v4.1 ATGGGAAATCGTGGACAAAAACGAGCAGAGATGGTTGATGAACTGCCGGCTGATAAGAGAGCCTGTAGTTCATTGGAGTTTAGACCAAGTTCATCCAACT CGTTAATTCAAACTCAAATAAATACTGAGACTCATAATGCTGAAATTCATGATGCTGACATGGATACTTCATCATCTGGTTCGGCATCAAGCCATTCTGA TGAGGAAGAACCTGAGATGGATTCAGCTCATGGCTCTTGTGATTCTGAGGGTCCAAGACATAGCAGTCTGCGTGAGTATCAGAGGCAGAGATCCTCTGGT GACCATAGTAGATTGAAGAGTTGTTTATTTAATTTGAGTGAAAGGACGGAGCCTTCTGGACAGTTAGCTGCTCTAACAGAGTTATGTGAAGTGCTTTCGT TTTGTACGGAGGATTCACTTTCTAGTACAATGGCAGACCTGTTATCTCCAGTACTTGTTAGGCTTTCAAGGCATGACAGTAACCCAGATATAATGCTGTT GGCAATAAGGGCTTTAACTTATCTGTGTGATGTGTTTCCCCGAGCATCTGTTTTTCTTGTTAGGCATGATGCTATTCCTGCTATTTGTCAAAGATTAATG GCCATTGAATACTTGGATGTAGCTGAACAGTGTTTGCAAGCATTGGAGAAAATAACTCGTGATCAACCACTTCCATGCTTACAAGCTGGGGCTATCATGG CAGTTCTAAGTTTTATAGACTTCTTCTCTACAAGCGTACAAAGAGTTGCACTTTCAACTGTGGTGAACATATGCAAGAAACTGCCATCAGAAAATTTTTC ACCTTTCATGGAGGCTGTTCCGATATTATGCAATCTTCTACAATATGAGGATCGACAGCTTGTTGAAAATGTTGCTATTTGCTTGATCAAAATAGCAGAA CGAGTCAGTCAGTCATCTGAGATGCTGGATGAACTATGCAAGCATGGACTAATTAATCAAGCTACTCATCTAGTGCAATTGAACAGCCGAACAACTCTAT CTCAGCCAGTATACAATGGTTTGATTGGGCTCCTTGTCAAACTTTCTTCTGGTTCGATTGTCGCTTTCAGGACCCTGTACGAGCTCAATATAAGCAGCAT TTTGAAGGACTTATTTGCCACTTATGACCTCTCTCATGGAATTTCTTCTCCTCATGTGATTGATGGGCAGGGCAACCAGGTACATGAAGTGCTCAAGTTG CTAAATGAGCTTCTCCCTACTGTAGCAAGAAATCAAGATGCTCAACAACTTGTGTTGGATAAAGAGGCATTTTTGGCTAATCACCCTGATCTCTTGCACA AGTTTGGATCGGATATAATTCCTTCCTTGATTCAGGTGGTTAATTCTGGTGCAAATCTATATGTTTGCTATGGCTGCTTATATGTCATCAACAAGCTAGT TTATCTCAGCAAATCTGACATGCTTCTGGAATTGCTTAAGAATACAAATTTTTCAAGCTTCTTGGCTGGAGTTCTTACTCGTAAAGATCACCATGTGCTG ATGTTAGCCCTGCAAATTACCGAGACAATTCTCCAAAAGCTTCCAGATGTTTTTGTGAACTCTTTCATCAAGGAAGGTGTCTTTTTTGCCATTGATGGCC TTCTTGTGCCTGAAAAATGTTCGCAATTGATCTTCCCAGCGTGCAATGGAATCCATCTGCCACTCAATTCTAATCAAAAGTCTTCTTCAAAAGTAGTCAT GAGATGTTTATGTTATGCTTTTGATACTGGGCAGTCTCTTTCAGCCTCGGAGACGGGAACATGCAAGCTTGAAAAAGACACTGTAGAAAATCTTGGAAAG CATATAAGAATTAGTTACTTTGCTTTAGAATCATGTGACTCTGAGAAAGGATTGACAGATATCCTTCAAAAGCTCAGAGCTCTTTCTGCTGAATTGAGTG ATTTGATGAATATGTCTGTCAAAATTGGTTCTTGCACCCAGGATGAAGAGAAATGTTACTCTATATTGTGTCAAATCATGGAAAAACTTGATGGAAGAGA GCCTGTGTCTACTTTTGAATTTATTGAAAGTGGGATTGTGAAGATATTAGTGAATTACTTATTCAATGGAAAATATCTGAGAGAAAAGGTGGAGCCTCAA AGTACATTTGATGATTTCTATGTTGTAGAGAAAAGATTTGAGGTATTTGCAAGGCTATTATCTTCTTCAGACCTATCTGAAGAGTCTCCTTTATCAGCAT TAATACAGAAATTGCAGGGTGCGTTATCTTCTTCGGAAAATTTCCCTGTTATTCTGAGCCATGCATCAAAGTACAGATCCTCATTTGCAATCATCCCTAA TGGACGTCGCACGTCTTATCCATGCCTAAGAGTTCGTTTTGTCAGGGGAGAGGGCGAAACATGCCTTTGCAACTACTCTGAAGATCCTGTGACAGTAGAT CCTCTTTCTTCTGTGAATACAATTGAAGGATTTCTATCTCCTAAAGTTAGAATAAAAGGAACTGAACAAATAGAATCAGCTGCTCAAGCTCTGGAGCCAG CAGAAAATGTACAGTTCAAATCACCATCAACTGCGAACCCCAGTGAAGGGGAAAGTTCAGGACTTATGGAGCCTGATAGCATGGCTTTTGATTTACTAGT AATGCAGGACAATGAAGCTAACCTATCACAGCCTCCACCAGAACTAGATGTAAATTTGATACAGAGAAATCCTGATGAAACATTATCAAATGATACTCAT ATTGTCTCAGTGGAGGATATAGTGCAGTCTCCTTCATGTGCTGATGACTCTACGAAAAGTCATTGTCCTACATCCTGTAGCAATGGAGATGCTATGCCAA AACTGGTATTTTACCTAGAAGGACAGCAGTTGGACCGAACTTTGACTCTTTACCAGGCAATACTCCAGCAAAAAGTTAAAGCAGACCATGAAATTAACAG CACAGCAAAGCTGTGGACTCAAGTACACACCTTGACTTACAGAATAGCTGTGGACACTAGAGATGATAATACTCAAGATTGCCCTAGTATGGCTCAAAAT TCCTCTATATTAGATCAAGCTGTGGCTTTTATGCAGCATCCTGCATTTTTCTCCAGCATGTTTAATTGTGAACTCCCTTCTGACCTGGATAAGTCTAGTC CTACTAATGATATATTGTTTCTGCTTAAAAGTTTAGAAGGTTTGAACAGGTTTATTTTTCATCTGATGTCTCATGAAAGAATCCATGCATTTGCTGAAGG GCTGATAGATAATTTGGATAATTTAAGGGTTGCAGCTCGCCCAGTAGCACAGAATGAGTTTGTGAGCAGTAAGTTGACAGAGAAATTGGAGCAACAGATG CGGGATTCTCTGGCTGTGTCCATGGGTGGCATGCCTGTGTGGTGCAATCAGCTCATGAATTCATGCTCCTTTTTGTTTAGCTTTGAGACTAGATGTAAAT ATTTCCAGCTGTCAGCATTTGGCTGTCAGCAAATTCAGATACAGCCTTCATCACATAATAATTCAGGTGTCTTGAGAGACAGGCTACCAAGTGCTGGCAG TTTGTCCCGTAAGAAATTCATAGTTTTACGTGACCAAGTTCTGGAGTCTGCTGCTCAGATGATGGACCGTTATGCCCATCTTAAAGTACCTATTGAAGTG GTATATAATGAAGAAGTTGGTACTGGTCTTGGTCCGACCTTGGAATTTTATACTCTGGTTAGTAAAGAGTTTCAGAAGTCTGGCATTGGCATGTGGAGGG AGGATCATATTTCATTTCCCACCATCGAGAACTTGCAGGCAGAATACTCTGGAATTGTGAAGTCTCCATTTGGACTTTTTCCTCGCCCATGGTCACCTAC AGTGGATGCATCTGATGGAGTACAGTTTTCTGAGGTTATTAAAAAGTTTTTCCTTCTGGGACAAATTGTAGCCAAGGCTCTTCAAGATGGCAGGGTGCTG GATCTACCATTCGCCAAAGTCTTCTATAAACTTATTCTTCAGCAGGAACTTAATTTGTATGACATCCAGTCCTTTGATCCTGAGCTTGGTAGGACTTTGC TAGAGTTCCAGGCTCTTGTCAACAGGAAAAAAAATATGGGATTAGTCATTGTAGAAAACTCATCTTCTACTCAAGATGCATGCTTTTGGAACACTAGAAT CGAGGATCTCTGTCTTGACTTTACTCTTCCTGGGTATTCTGATTACATTCTTAGTTTTGATGAAGATCACAAAATTGTGAATATGGATAACTTGGAGGTG TATGTTTCTCACATTGTGGATGCTACTATACACACAGGAATTTCCAGACAAGTTGAAGCATTCAAGTCTGGATTTAACCAGGTTTTTCCAATTAAACATC TTATGATTTTTACTGAGGAGGAACTTGAGCGTTTGCTATGTGGAGAACGTGATTTTTGGGCTTTCAATGAGCTTTTGGATCATATCAAGTTTGATCATGG ATACACTGCTAGCAGTCCTCCTATTGTTAATTTACTGGAAATCATAAAAGAATTTGAATATGAACAACGACGATCATTTCTACAGTTTGTAACTGGGGCA CCTCGGCTACCTACAGGAGGCTTGGCGTCTCTGAATCCAAAATTGACCATTGTACGGAAGCATTGCAGCAACTGTGAAGATGTGGACCTTCCCAGTGTGA TGACTTGTGCCAATTATCTGAAGTTGCCTCCCTACTCGTCGAAAGATAAGATGAAGGAGAAACTTCTGTATGCCATAACAGAGGGTCAAGGCTCATTCCA CCTCTCGTAG
AA sequence Show only first row Show all	>Potri.016G085200.4 pacid=42809346 polypeptide=Potri.016G085200.4.p locus=Potri.016G085200 ID=Potri.016G085200.4.v4.1 annot-version=v4.1 MGNRGQKRAEMVDELPADKRACSSLEFRPSSSNSLIQTQINTETHNAEIHDADMDTSSSGSASSHSDEEEPEMDSAHGSCDSEGPRHSSLREYQRQRSSG DHSRLKSCLFNLSERTEPSGQLAALTELCEVLSFCTEDSLSSTMADLLSPVLVRLSRHDSNPDIMLLAIRALTYLCDVFPRASVFLVRHDAIPAICQRLM AIEYLDVAEQCLQALEKITRDQPLPCLQAGAIMAVLSFIDFFSTSVQRVALSTVVNICKKLPSENFSPFMEAVPILCNLLQYEDRQLVENVAICLIKIAE RVSQSSEMLDELCKHGLINQATHLVQLNSRTTLSQPVYNGLIGLLVKLSSGSIVAFRTLYELNISSILKDLFATYDLSHGISSPHVIDGQGNQVHEVLKL LNELLPTVARNQDAQQLVLDKEAFLANHPDLLHKFGSDIIPSLIQVVNSGANLYVCYGCLYVINKLVYLSKSDMLLELLKNTNFSSFLAGVLTRKDHHVL MLALQITETILQKLPDVFVNSFIKEGVFFAIDGLLVPEKCSQLIFPACNGIHLPLNSNQKSSSKVVMRCLCYAFDTGQSLSASETGTCKLEKDTVENLGK HIRISYFALESCDSEKGLTDILQKLRALSAELSDLMNMSVKIGSCTQDEEKCYSILCQIMEKLDGREPVSTFEFIESGIVKILVNYLFNGKYLREKVEPQ STFDDFYVVEKRFEVFARLLSSSDLSEESPLSALIQKLQGALSSSENFPVILSHASKYRSSFAIIPNGRRTSYPCLRVRFVRGEGETCLCNYSEDPVTVD PLSSVNTIEGFLSPKVRIKGTEQIESAAQALEPAENVQFKSPSTANPSEGESSGLMEPDSMAFDLLVMQDNEANLSQPPPELDVNLIQRNPDETLSNDTH IVSVEDIVQSPSCADDSTKSHCPTSCSNGDAMPKLVFYLEGQQLDRTLTLYQAILQQKVKADHEINSTAKLWTQVHTLTYRIAVDTRDDNTQDCPSMAQN SSILDQAVAFMQHPAFFSSMFNCELPSDLDKSSPTNDILFLLKSLEGLNRFIFHLMSHERIHAFAEGLIDNLDNLRVAARPVAQNEFVSSKLTEKLEQQM RDSLAVSMGGMPVWCNQLMNSCSFLFSFETRCKYFQLSAFGCQQIQIQPSSHNNSGVLRDRLPSAGSLSRKKFIVLRDQVLESAAQMMDRYAHLKVPIEV VYNEEVGTGLGPTLEFYTLVSKEFQKSGIGMWREDHISFPTIENLQAEYSGIVKSPFGLFPRPWSPTVDASDGVQFSEVIKKFFLLGQIVAKALQDGRVL DLPFAKVFYKLILQQELNLYDIQSFDPELGRTLLEFQALVNRKKNMGLVIVENSSSTQDACFWNTRIEDLCLDFTLPGYSDYILSFDEDHKIVNMDNLEV YVSHIVDATIHTGISRQVEAFKSGFNQVFPIKHLMIFTEEELERLLCGERDFWAFNELLDHIKFDHGYTASSPPIVNLLEIIKEFEYEQRRSFLQFVTGA PRLPTGGLASLNPKLTIVRKHCSNCEDVDLPSVMTCANYLKLPPYSSKDKMKEKLLYAITEGQGSFHLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G02880		UPL4	ubiquitin-protein ligase 4 (.1...		Potri.016G085200 [exp]	0	1
AT4G27190			NB-ARC domain-containing disea...		Potri.001G426200 [exp]	2.23	0.8874
					Potri.010G242200 [exp]	3.16	0.8551
AT5G09950			Tetratricopeptide repeat (TPR)...		Potri.013G129100 [exp]	3.46	0.8866
AT4G27290			S-locus lectin protein kinase ...		Potri.011G037000 [exp]	4.12	0.8376
AT1G11330			S-locus lectin protein kinase ...		Potri.011G039000 [exp]	6.70	0.8514
AT4G25520		SLK1	SEUSS-like 1 (.1)		Potri.001G109901 [exp]	7.41	0.7914
AT2G17930			Phosphatidylinositol 3- and 4-...		Potri.007G057850 [exp]	7.74	0.8544
AT3G26020			Protein phosphatase 2A regulat...		Potri.008G180000 [exp]	8.36	0.8539
AT2G17930			Phosphatidylinositol 3- and 4-...		Potri.007G057900 [exp]	9.94	0.8617
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Potri.008G124700 [exp]	11.40	0.8504

Compare expression of checked genes

Potri.016G085200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.