Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09650 959 / 0 CRM3, HCF152 HIGH CHLOROPHYLL FLUORESCENCE 152, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G03100 159 / 2e-40 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 150 / 7e-38 RPF2 rna processing factor 2 (.1) AT1G62910 148 / 4e-37 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G05670 148 / 6e-37 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT5G61990 147 / 3e-36 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62720 142 / 4e-36 AtNG1 novel gene 1, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G01110 145 / 5e-36 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63070 143 / 1e-35 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G63130 143 / 1e-35 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G046000 [exp] 172 / 3e-45 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G038400 [exp] 159 / 7e-41 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050400 [exp] 154 / 2e-39 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050180 [exp] 151 / 2e-38 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050240 [exp] 149 / 1e-37 AT1G12700 465 / 1e-155 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.018G038300 [exp] 146 / 9e-37 AT1G12700 490 / 8e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G242500 [exp] 145 / 2e-36 AT1G62930 473 / 1e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G032600 [exp] 145 / 3e-36 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.015G105400 [exp] 146 / 5e-36 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015059 [exp] 953 / 0 AT3G09650 969 / 0.0 HIGH CHLOROPHYLL FLUORESCENCE 152, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023168 [exp] 259 / 4e-81 AT3G09650 314 / 1e-102 HIGH CHLOROPHYLL FLUORESCENCE 152, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029737 [exp] 165 / 2e-42 AT1G63130 424 / 6e-140 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042768 [exp] 162 / 1e-41 AT1G12700 418 / 8e-138 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10013283 [exp] 148 / 4e-37 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10007468 [exp] 145 / 7e-36 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 144 / 1e-35 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10043417 [exp] 144 / 3e-35 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 142 / 9e-35 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 141 / 2e-34 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.016G085300.1 pacid=42809195 polypeptide=Potri.016G085300.1.p locus=Potri.016G085300 ID=Potri.016G085300.1.v4.1 annot-version=v4.1 ATGAACTTACCTCTACCCTCATCCTCTCCATGCTCTTCTCCTTCTTCTTCTCCACTCACTAGTTCCTTCCCTCTCACTCTCCGCTGCCCCTCTCCTCCAC TTTCCACCATTTCCAAACTCATCCGCCTATCTCGACTACACACAGCCACCAATCATTTCAACCCCACTACAAAAGACCTATCTCTCGCCACCTCCATCCC CACCAGTATCACCTCATCCAGCAATGACCAAACCCTCTTATCACTCCTTCGCCAAAGAAAAACGGAAGAAGCCTGGGTCCTATACACCCAAACACCTCAC CTTCCACCACCCACTTGCCTTAGCCGCCTAGTCTCTCAGCTCTCCTACCAAAACACCCCTCTCAGCCTCAGACGCGCCCAGTCCATCCTCACGCGCCTCC GCCATGAATGCCAACTCCACCGACTCGACGCCAATTCCCTTGGTCTTCTCGCTGTCTCCGCTACCAAATCCGGACAGCTCTCTTACGCTTTCTCCCTTAT CAACTCCATGCTCCGCTCTGGCTACCTCCCCCATGTCAAGGCCTGGTCTGCCGTCCTCAGCCGCCTCGCTTCAGCCCCGGATGGTGGCCCCACACGAGCC CTTAAGCTTTTTAACACAATTACTCGCCGTGTGCGTCGGTTCTCTGACGTAACAATGGTGGCTGACTCAAGACCTGACACTGCGGCTTTTAATAATGTGC TCAATGCCTGCGCTAATTTGGGAGATGGTAAAATGTTTTTGAAGTTGTTTGAGGAAATGCCTGATTTTGGTCTAGAGCCTGATATATTGACTTATAATAT TATGATTAAACTATGTGCGAGGTGTAATAGGAAAGATTTGCTTGTGTTTGTTTTAGAGAGGGTGATTGAGAAAGGAATTCCTTTATGTATGACTACATTG CATTCGCTTGTCGCGGCATATGTTGGGTTTGGTGATTTGGAAACTGTGGAGAGAATGGTTCAAGCAATGAGAGAAGGAAGGAGAGATTTGTGTAAGATAC TTAGGGAGGCGAATTTGGAGGACTTTAATGAAGATGAGGAGAACGAGGTTTTGGATTCGAGTCAAATTGGGGTAAGTGTGTTTGAGAAGTTGCTTCCAAA TTTGGTTGAAGTTAGCAATAGTGAGCCACCGTTGTTGCCGAAAGTGTTTGCTCCTGATTCGAGAATATTCACGACTTTGATGAAGGGTTATATGAAGCAA GGTCGTGTGACAGATACTGTAAGAATGCTGGAAGCAATGAGGTGCCAGGACGATAGCAAAGGTCAACCTGATCACATTACATATACAACCGTTATTTCTG CTCTTGTTAAGGCAGGTTCTATGGATCCTGCTCGTCAAGTGCTTGCTGAGATGACTAGAATTGGTGTGCCAGCAAATAGGATTACTTATAATATTCTGCT CAAAGGTTATTGCCAGCAGCTACAGATAGATAAGGCAAAAGAGCTGCTTAAAGAGATGGCTGATGATGTGAATATTGAGCCTGATGTGGTTTCATATAAT ACTTTGATTGATGGTTGTATACTGGTTGATGACAGTGCAGGGGCTCTTGCATTTTTCAATGAGATGCGAACAAAGGGAATCATGCCCACCAAGATCAGCT ACACTACTTTGATGAAAGCTTTTGCTTTGTCAGGTCAACCAAAGTTGGCTAACAAGGTTTTCGATGAGATGTTGAAAGACCCACGAGTGAAAGCTGATTT GGTTGCTTGGAATATGTTGCTTGAAGGATACTGTAGATTGGGATTGGTTGATGAAGCAAAGACAGTAATCCAGAGAATGAAAGAGAATGGTTTCCACCCT GATGTGGCGACTTATGGCAGTCTTGCAAATGGTATATCATTGGCAAGAAAACCAGGAGAGGCGCTTCTGCTCTGGAAAGAAGTGAAAGAACGGTGGGAGG TGAAAGGAGAAGGGGAGAGTTCCAATTCTGATTCTCCTCTCCTGCCATTGAAACCCGATGAAGAGCTGTTGGCAACACTGGCTGATATCTGTGTGAGAGC TGCATTCTTCCAGAAGGCCTTAGAAATTGTGGCTTGCATGGAAGAAAATGGGATACCGCCTAACAAGACCAAGTATAAGAAGATCTATGTAGAGATGCAT TCAAGGATGTTTACTAGTAAGCATGCGTCACAGGCCAGGCAGGATAGGAGAAGAGAAAGGAAGAGAGCAGCCGAGGCTTTCAAGTTTTGGTTGGGTTTGC CCAATTCTTATTATGGCAGTGAGTGGAGGTTAGACCCTGGGGATCCAGATTATTAA
AA sequence Show only first row Show all	>Potri.016G085300.1 pacid=42809195 polypeptide=Potri.016G085300.1.p locus=Potri.016G085300 ID=Potri.016G085300.1.v4.1 annot-version=v4.1 MNLPLPSSSPCSSPSSSPLTSSFPLTLRCPSPPLSTISKLIRLSRLHTATNHFNPTTKDLSLATSIPTSITSSSNDQTLLSLLRQRKTEEAWVLYTQTPH LPPPTCLSRLVSQLSYQNTPLSLRRAQSILTRLRHECQLHRLDANSLGLLAVSATKSGQLSYAFSLINSMLRSGYLPHVKAWSAVLSRLASAPDGGPTRA LKLFNTITRRVRRFSDVTMVADSRPDTAAFNNVLNACANLGDGKMFLKLFEEMPDFGLEPDILTYNIMIKLCARCNRKDLLVFVLERVIEKGIPLCMTTL HSLVAAYVGFGDLETVERMVQAMREGRRDLCKILREANLEDFNEDEENEVLDSSQIGVSVFEKLLPNLVEVSNSEPPLLPKVFAPDSRIFTTLMKGYMKQ GRVTDTVRMLEAMRCQDDSKGQPDHITYTTVISALVKAGSMDPARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLKEMADDVNIEPDVVSYN TLIDGCILVDDSAGALAFFNEMRTKGIMPTKISYTTLMKAFALSGQPKLANKVFDEMLKDPRVKADLVAWNMLLEGYCRLGLVDEAKTVIQRMKENGFHP DVATYGSLANGISLARKPGEALLLWKEVKERWEVKGEGESSNSDSPLLPLKPDEELLATLADICVRAAFFQKALEIVACMEENGIPPNKTKYKKIYVEMH SRMFTSKHASQARQDRRRERKRAAEAFKFWLGLPNSYYGSEWRLDPGDPDY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G09650		CRM3, HCF152	HIGH CHLOROPHYLL FLUORESCENCE ...		Potri.016G085300 [exp]	0	1
AT2G22360			DNAJ heat shock family protein...		Potri.007G094900 [exp]	2.82	0.9582
AT5G24690			Protein of unknown function (D...		Potri.003G019600 [exp]	3.00	0.9506
AT2G03050		SOLDAT10, EMB93	SINGLET OXYGEN-LINKED DEATH AC...		Potri.010G167400 [exp]	3.31	0.9500
AT3G22690			unknown protein		Potri.013G044700 [exp]	5.29	0.9634
					Potri.005G063600 [exp]	6.00	0.9610
AT4G25270		OTP70	organelle transcript processin...		Potri.015G128800 [exp]	6.48	0.9590
AT3G57990			unknown protein		Potri.001G145400 [exp]	6.70	0.9577
AT3G49170		EMB2261	embryo defective 2261, Tetratr...		Potri.015G018700 [exp]	7.21	0.9490
AT5G63290			Radical SAM superfamily protei...		Potri.012G092900 [exp]	8.00	0.9512
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.001G075800 [exp]	10.95	0.9575

Compare expression of checked genes

Potri.016G085300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.