Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09670 260 / 5e-77 Tudor/PWWP/MBT superfamily protein (.1.2) AT5G02950 222 / 1e-63 Tudor/PWWP/MBT superfamily protein (.1) AT5G27650 101 / 6e-22 Tudor/PWWP/MBT superfamily protein (.1) AT5G40340 94 / 9e-20 Tudor/PWWP/MBT superfamily protein (.1) AT3G05430 91 / 1e-18 Tudor/PWWP/MBT superfamily protein (.1) AT3G27860 79 / 3e-15 Tudor/PWWP/MBT superfamily protein (.1) AT3G48190 59 / 1e-08 PIG1, ATATM, ATM pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G131800 [exp] 900 / 0 AT3G09670 236 / 2e-66 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.008G044600 [exp] 287 / 1e-83 AT5G02950 279 / 2e-80 Tudor/PWWP/MBT superfamily protein (.1) Potri.010G216900 [exp] 283 / 3e-82 AT3G09670 235 / 7e-65 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.004G130600 [exp] 136 / 4e-33 AT5G40340 220 / 5e-59 Tudor/PWWP/MBT superfamily protein (.1) Potri.005G026800 [exp] 105 / 4e-23 AT5G27650 431 / 1e-132 Tudor/PWWP/MBT superfamily protein (.1) Potri.013G018700 [exp] 99 / 4e-21 AT5G27650 687 / 0.0 Tudor/PWWP/MBT superfamily protein (.1) Potri.012G081500 [exp] 88 / 9e-18 AT3G48190 131 / 2e-30 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) Potri.008G209900 [exp] 50 / 8e-07 AT5G27650 149 / 1e-41 Tudor/PWWP/MBT superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016267 [exp] 317 / 4e-98 AT3G09670 276 / 9e-82 Tudor/PWWP/MBT superfamily protein (.1.2) Lus10012010 [exp] 306 / 7e-95 AT3G09670 283 / 2e-85 Tudor/PWWP/MBT superfamily protein (.1.2) Lus10040367 [exp] 212 / 7e-58 AT5G02950 209 / 8e-56 Tudor/PWWP/MBT superfamily protein (.1) Lus10023486 [exp] 211 / 1e-57 AT5G02950 207 / 2e-55 Tudor/PWWP/MBT superfamily protein (.1) Lus10032141 [exp] 122 / 1e-28 AT5G40340 187 / 3e-48 Tudor/PWWP/MBT superfamily protein (.1) Lus10014546 [exp] 120 / 5e-28 AT5G40340 184 / 2e-47 Tudor/PWWP/MBT superfamily protein (.1) Lus10031498 [exp] 99 / 4e-21 AT5G27650 633 / 0.0 Tudor/PWWP/MBT superfamily protein (.1) Lus10015177 [exp] 99 / 5e-21 AT5G27650 634 / 0.0 Tudor/PWWP/MBT superfamily protein (.1) Lus10002382 [exp] 72 / 1e-12 AT3G48190 115 / 1e-25 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) Lus10042113 [exp] 65 / 2e-10 AT3G48190 115 / 1e-25 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [poplar] [flax] Tudor PF00855 [poplar] [flax] PWWP PWWP domain
Representative CDS sequence Show only first row Show all	>Potri.016G085500.1 pacid=42809578 polypeptide=Potri.016G085500.1.p locus=Potri.016G085500 ID=Potri.016G085500.1.v4.1 annot-version=v4.1 ATGCCTGCAAATCTTGACAGCATAGACTTGAACTCCGACGTCGTTTCCGGTGAACGAGAAGACGGTGTTAATGGGTTTAGTAACGTCTCTGTGGTAAAGA GTATGGTGGGTTTATCTTCTGATGCTGAAACCCTAATGGACTCTGTTACTAATAGTCAGGGTCAGAACCAGGAGCCTGTAGTAGATGAAGTTAAGGATTT TAAAGGGGCTAATGACTTGAAGGAGGTTGCAGTTGGTGGGCTAGGCTGGGAGGGAAAGATGGATTCTGTTTATAAAAGTGTTGATTTTGAAGGGGAAAAT GGGTCTGGAAGTGGTGTTGGTGATGCCTCTGTGCGAGAAGCAGCGGAAATAACCGAAACACACTCGAGTAAAGTAGTGGTAGAAGAAAATAGTTCGTGTG AAATTGAGGGGGAAGTGAAGGCGGGGGGTTGTGGCGGAGTGAGTTCAAGTTCAGTTGGGGAGGATGCGATCCAAGTTGAAAATGCTAACGTGGAAGTGAA AGTAGACAGTGCGAATGACTTACTGCCTCGCAAAAAACCTGGAAATGTTTCACCAAAGGTTAGTTCTGAAGGTGTAGAGAATCAGGGCATGGAAATCAAT GACGAACAAGCTAAGAATTCTGAGGGTCAAAATGAGGATGCTGCTGCTTTTGATGAAAGGGTTTTGCAGGAAATTGAGAACCTTGAATCCAATGATTTAA ATCTTGTTGCGGATTCGGAGCCTTACGTGGGTGCAGATGGGAATGCAAAAATGGCTTCCAAAGAAGCAGGATTGGGTGTTGGTGATCTGGTATGGGGTAA AGTAAGGAGCCATCCCTGGTGGCCTGGCCAGTTATTTGGTTGTGCTGATGCGTCAAAGAAGGCTAAGAAGCATTTTAAAAAGGATAGCTATTTAATAGCA TACCTTGGGGATCAAACTTTTGCTTGGAATGAAGTGTCAAAGATAAAGCCATTCCGATGCAACTTCTCGCTATTGGAGAAACAGAGCAATTTAGAGGATT TTCATGATGCTGTTCATTGTGCTTTGGATGAGGTTTCTAGACGGGTAGAGTTTGGGCTAGCTTGTCCTTGCATGCCTGGGTATAGCAAGATAAAAACTCA GATAATTGTCAATCCCGGAATCCGGGAAGAATCTTGTAGAAGGGATGGTGGAGATAGTTTCTCGAGTGCTGCTTCCTTTGAACCTGCAAAGCTAAATGAC TATGTGAAAGAATTAGGCCAATTGCCATTAAGTGGAATTGACACACTGGAGTTTGTAACAGCACGATCCCAATTGTTGGCATTCAATCGTTGGAAGGGTT ATTGTCACCTGCCTGAATTTCAATTCCTTGGTGAATTGCTAGAGAGTGATGCAGAGATTCCACTATCACCAGAAGTTAAACACGGCAGTGAAAAGGTTGA CAATGCTGCTACCACGGTTGGAAAGGAGAAGCCAAAAGGTGAAGATCACTCTTTGCATAGGCGTAAGTGTAAGCGCATTTATGGGGATGATGAACATCCA AGCGAGAAAGAAAAATGTTTGGCTGACCTTATTGCTGAAAGGCGCGCATCGGCTGCTAAAGGTAAAGGTGGTTTGGATGGTGAAGCTACTGGCGAGATGA CCAAGTCATCTTCAGGTCGGAAAAGGAAGGCTGTTGATTCTATTTCTGATGACTCAGTGATGAAACAAAGCAAAAGTCCTTCCTCGCCAGGGATTGATAA TGGTTCCTCACAGCCTAAGAAAACCTATAGGGTTGGAGATAGCATCCTTAGGGTAGCAAGCCAACTGAATACGTCAACGCCTATACTCAAATCTGTTAAT GGAACTTACCAAAAAACTGCAGTGAAGGCTAAGAGCCAGGAGAAGTCTGCCTCTGGAAAATGCAAAGCTTCGCCTGATGTGTTGGTGTCACGTACTTGCC TGGTTGGCAGAGATCTATGA
AA sequence Show only first row Show all	>Potri.016G085500.1 pacid=42809578 polypeptide=Potri.016G085500.1.p locus=Potri.016G085500 ID=Potri.016G085500.1.v4.1 annot-version=v4.1 MPANLDSIDLNSDVVSGEREDGVNGFSNVSVVKSMVGLSSDAETLMDSVTNSQGQNQEPVVDEVKDFKGANDLKEVAVGGLGWEGKMDSVYKSVDFEGEN GSGSGVGDASVREAAEITETHSSKVVVEENSSCEIEGEVKAGGCGGVSSSSVGEDAIQVENANVEVKVDSANDLLPRKKPGNVSPKVSSEGVENQGMEIN DEQAKNSEGQNEDAAAFDERVLQEIENLESNDLNLVADSEPYVGADGNAKMASKEAGLGVGDLVWGKVRSHPWWPGQLFGCADASKKAKKHFKKDSYLIA YLGDQTFAWNEVSKIKPFRCNFSLLEKQSNLEDFHDAVHCALDEVSRRVEFGLACPCMPGYSKIKTQIIVNPGIREESCRRDGGDSFSSAASFEPAKLND YVKELGQLPLSGIDTLEFVTARSQLLAFNRWKGYCHLPEFQFLGELLESDAEIPLSPEVKHGSEKVDNAATTVGKEKPKGEDHSLHRRKCKRIYGDDEHP SEKEKCLADLIAERRASAAKGKGGLDGEATGEMTKSSSGRKRKAVDSISDDSVMKQSKSPSSPGIDNGSSQPKKTYRVGDSILRVASQLNTSTPILKSVN GTYQKTAVKAKSQEKSASGKCKASPDVLVSRTCLVGRDL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G09670			Tudor/PWWP/MBT superfamily pro...		Potri.016G085500 [exp]	0	1
AT5G63020			Disease resistance protein (CC...		Potri.001G313300 [exp]	1.41	0.8866	RGA3.1
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.012G002200 [exp]	4.00	0.8195	Pt-CNGC.2
AT3G14470			NB-ARC domain-containing disea...		Potri.014G012000 [exp]	4.47	0.8584
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Potri.004G120500 [exp]	4.89	0.8391
AT3G14470			NB-ARC domain-containing disea...		Potri.004G170300 [exp]	5.09	0.8226
AT1G76900	TUB	AtTLP1	tubby like protein 1 (.1.2)		Potri.005G192400 [exp]	6.32	0.8332
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Potri.017G094400 [exp]	6.92	0.8064
AT3G14470			NB-ARC domain-containing disea...		Potri.014G007600 [exp]	7.93	0.8390
AT5G55600			agenet domain-containing prote...		Potri.006G017400 [exp]	8.66	0.8412
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G038400 [exp]	10.58	0.8349

Compare expression of checked genes

Potri.016G085500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.