Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53320 174 / 5e-46 unknown protein AT2G37070 127 / 2e-30 unknown protein AT5G60150 62 / 1e-09 unknown protein AT2G38890 49 / 6e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G131650 [exp] 1305 / 0 AT3G53320 146 / 1e-36 unknown protein Potri.010G217000 [exp] 108 / 5e-24 AT2G38890 92 / 2e-20 unknown protein Potri.008G044500 [exp] 62 / 2e-09 AT2G38890 107 / 1e-25 unknown protein Potri.005G131500 [exp] 59 / 2e-08 AT5G60150 106 / 9e-23 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023170 [exp] 290 / 4e-85 AT3G53320 133 / 1e-32 unknown protein Lus10026478 [exp] 196 / 4e-52 AT3G53320 56 / 8e-08 unknown protein Lus10019909 [exp] 142 / 7e-35 AT3G53320 93 / 1e-19 unknown protein Lus10023488 [exp] 64 / 5e-10 AT2G38890 100 / 3e-23 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.016G085600.2 pacid=42809015 polypeptide=Potri.016G085600.2.p locus=Potri.016G085600 ID=Potri.016G085600.2.v4.1 annot-version=v4.1 ATGAATGAATCAGAGCAAAATTTCTGTTTCGAAGATAGAAGGTTGAGCCTCATTGATGTCTCCTTCGAAGACGATTGCCTCTACAGCTCCCCTTCTCACG GCTTTCATGTCCGATTTTCAGATGCTGCTAAGACAGAGGCCAAGAGTAATTTGGGTTTTACAGATGCCAACTTCACGCAATTCGACGGGGGAGAAGTAGG AGCTGAGCCAGTTGAATCAGTGGAAGCAGAAAGGGTGAAAAAGAAGAACAAGTATAACTTGCGCAAAAGTATAGCTTGGGACAGTGCTTTCTTCACAAGC GCAGGTGTTTTAGAACCGGAGGAGTTGTCTACGATGATTGGAAGTGGGAAACATATGTTACCTGGAATTGAAGAGGATATTCATAAATCTACTGATTCAA TATCCACATTAGCGAGTGATAATTTGACGTTGGAGAATCTTGAGGCTGACTTGTTTGGAGATATAAGAGCTTCAATCCAGCGATCCACTAAAGGATCTGA TGTGGCAAATTCAACTAGTAAAGTGGTTTCTCCGGAAACAGAAAATGCAAGTATCCCATCTTTGGAGAAAGCGGATGTTGCTTCTCAAAATAAGTTAAAA GCCAAAACTGCTCCCAACAAACCAAATGCAGTCATGCAAGGAACAGAGAAGACTGCAAAGCAGTCTAATCCTGTACATGGAGATTCAAAATCTCTATGTA GGCCGCCCAAGATAGTGAGCAGAGTTGGTCCCATCTTAACACCAGCAACTAAGAGAGCTTCCTTAGGTGCCAACCGTGTCAAAGTGGAAAAGTATAAGGA TAGTCCAGAAAATGAAAAAAGATTGACTGGTAGGGGTGCAAAAGTACCTGCTTTGGGTGGTCCCCGAAATGTTGTGCCTAGGCCCACATTGCCTATTAAA TCTTCATTGCGATCTTCATCAGCATTGAAGACTCAGCTAAAAACTTCTTCCTGTGTTGATAGTTCAGGACGTTTGTCATCAGATAGTAGCAGTAAATCTT CATTGAATTTTTTGAGAAAGGATGACTCCAGAACTGGCAATCATTCTTCCTCTACTTCAAATGTCAAAACCGCGTTAAAATTGCCATCAAGAAACAAAAA CCAGTCAACTAGTTCACATCTCTCTCCTTATTTGAAATCCGTGACCAAACTCTCTTCCAACATATCACCTGCTAGCTCTATCAGTGAATGGTCTTCAGCA TCATTATCACCAACTTCTACACTTAATAAAACGTCTAACAGTTCAAGATCTAGCTTTGACATTAGCTCTTGCAAAGATGCTTCTGGAGACGGTGATGCCT CCCAAGTTATGGATTCGCAAAACTATTTCAATGATGAACACTCTGTTGGGCATGGTACCCAAGTAGGATTGTCGGGTGAATGTGTAAAGAAAGCTACTAC AGCAAGCAGTTCAGTTCTCCATCCAGATTCGGCTAAACCCTCAGGCCTTCGGTTGCCGTCACCCAAAATTGGTTTCTTTGATGGGGTAAGATCAGCTGTG CGAACTCCCAATAGAAATAAGCAATCTCATGAAGCTCTGCCCAGTGGCTTGCCTGGATTTGGGGCAGGAAGTGTTGTTAGTCCAAGTGGAGGATCAAATG AGGCGAAGGTTGGAAAGCTTCAGCCTGCTAGAACAGCAGTTCGGGGAACCAGAATCATGGATCAGGTAACTGCCTCGGGCATGAAATCTAAATCTCCCTT GCTACTGCAGGAATCCTCTATCGCAGCGCCAAGGGTCTCCAGTGCTGTGAAAAATGAAAAACGCAATGCTAGCACATCTCTGAAAGCCCAGAGTAGAATG TCTTTTCAAGGTGAAAGAAAAAGCAATTTGAAGGATAAGAAAGTTGGATTGGAAGAATGTAATAAGTCTCTGAACAATTCAGATAGTGGTTTTACTGAAA GGAATGGGGATGCCTGTTTCTTGAAGGATAAAAAGGAAACAGAGTGCAAGGGTGATGCTCCTGAAAAAGATACAGAGGTTACTCTCTGCAATGGATTGCC TTATATCACAACTGACTCGAGTTCTATTGAAAATATAACCTCATTAGAGAAAGTAAGTGGAGATGTGATATGTAGCCAAAATTATATCAAGGATAGTTTG CCTTATCCTTACAGCACCAATGAGAAGGAAAAGGCTTCTATTGAAGATCGAGTTGATGGTTTGACCAAACAAATTGGAGCTGTAGATTTTTATATCGAGA TGCACAAAGAAACTGTAGGTGATTCTCTTTCCCTTTCTAAAGATGATGTCAGTAGAGTTGATTCTGGTATTCAGGAGGAATTCAAACACTCATCAAAGCC TACCAACTCCTTGAATCCTACTATGGCATCAACAATCATGGAAGCAGAGGCAGTAATTGAGAGAGATTTTGTTGAAGACCAAGTTGGTGACTTGACCAAA CAAGTTGGAGCTGTAGATTTTCATCTTGATATGCACAAAGAAGGGGGTGGTGATTCTCTTTCCCTTTCTCGACACGATGTCATCAGAGTTGATTCTGGTA TTCAGGAGGAATGCAAAGAATTGTCAAATCCTGCGTGCTCTCCTGTTCCTGATATTGCATCATCAATGGTGGAAACAGGGAAAGCAGAGGCAGGTCTTCA TAAAGCTTCTGCTGAAGACCAAGTTGATGGTTTGACCAAACAAATAGGAGCTTTTGGTATTCATATCAAGATGCATAAAGAAGCGGTGGGTGATTCTCTT TCCTTTTCTCAAGATGATGTTAGCAGAGTTCATTCTCATATTGGTGAGCAATTGAAAGAGTTGTCAAATCCTACTTCCTCTCCGTATCCTGCTATAGCAT CAACAATGGTGGAAGCAGAGAAGGCAGAGGCAGGAATTGAGAAAGTTTCTGTTAAAGACCTGGTTGATAGTTTGACCAAACAAATCAGAGCTTTAGATAT TCATGTCGACGTGCACAAAGAACTTGTCAGTGATTCTCTTTCCCATTCTCAAGATGATGCCAGCAAAGTTGATTTTGGCATTCAGGAGGAATACAATGAG TTGTCAAAGCCTGCTTGCTCTGCCACTCCTGCCAGGGCATCAACAACGGTGGAAGCACAGATGGCAGAGGCGGCCATCTTACTACATCAAACAACCACCA ATGGAAAACCTAAAGATGGTGAAACATCCCAGCAGTAA
AA sequence Show only first row Show all	>Potri.016G085600.2 pacid=42809015 polypeptide=Potri.016G085600.2.p locus=Potri.016G085600 ID=Potri.016G085600.2.v4.1 annot-version=v4.1 MNESEQNFCFEDRRLSLIDVSFEDDCLYSSPSHGFHVRFSDAAKTEAKSNLGFTDANFTQFDGGEVGAEPVESVEAERVKKKNKYNLRKSIAWDSAFFTS AGVLEPEELSTMIGSGKHMLPGIEEDIHKSTDSISTLASDNLTLENLEADLFGDIRASIQRSTKGSDVANSTSKVVSPETENASIPSLEKADVASQNKLK AKTAPNKPNAVMQGTEKTAKQSNPVHGDSKSLCRPPKIVSRVGPILTPATKRASLGANRVKVEKYKDSPENEKRLTGRGAKVPALGGPRNVVPRPTLPIK SSLRSSSALKTQLKTSSCVDSSGRLSSDSSSKSSLNFLRKDDSRTGNHSSSTSNVKTALKLPSRNKNQSTSSHLSPYLKSVTKLSSNISPASSISEWSSA SLSPTSTLNKTSNSSRSSFDISSCKDASGDGDASQVMDSQNYFNDEHSVGHGTQVGLSGECVKKATTASSSVLHPDSAKPSGLRLPSPKIGFFDGVRSAV RTPNRNKQSHEALPSGLPGFGAGSVVSPSGGSNEAKVGKLQPARTAVRGTRIMDQVTASGMKSKSPLLLQESSIAAPRVSSAVKNEKRNASTSLKAQSRM SFQGERKSNLKDKKVGLEECNKSLNNSDSGFTERNGDACFLKDKKETECKGDAPEKDTEVTLCNGLPYITTDSSSIENITSLEKVSGDVICSQNYIKDSL PYPYSTNEKEKASIEDRVDGLTKQIGAVDFYIEMHKETVGDSLSLSKDDVSRVDSGIQEEFKHSSKPTNSLNPTMASTIMEAEAVIERDFVEDQVGDLTK QVGAVDFHLDMHKEGGGDSLSLSRHDVIRVDSGIQEECKELSNPACSPVPDIASSMVETGKAEAGLHKASAEDQVDGLTKQIGAFGIHIKMHKEAVGDSL SFSQDDVSRVHSHIGEQLKELSNPTSSPYPAIASTMVEAEKAEAGIEKVSVKDLVDSLTKQIRALDIHVDVHKELVSDSLSHSQDDASKVDFGIQEEYNE LSKPACSATPARASTTVEAQMAEAAILLHQTTTNGKPKDGETSQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53320			unknown protein		Potri.016G085600 [exp]	0	1
AT1G16330		CYCB3;1	cyclin b3;1 (.1)		Potri.008G083200 [exp]	1.00	0.9460
AT4G01730			DHHC-type zinc finger family p...		Potri.002G186800 [exp]	3.31	0.9194
AT3G09080			Transducin/WD40 repeat-like su...		Potri.006G096400 [exp]	5.00	0.9260
AT2G20635			ATP binding;protein kinases;pr...		Potri.007G139000 [exp]	6.00	0.9386
AT1G63640			P-loop nucleoside triphosphate...		Potri.003G127800 [exp]	6.78	0.9093
AT5G05510			Mad3/BUB1 homology region 1 (....		Potri.010G185500 [exp]	8.18	0.8807
AT3G44050			P-loop containing nucleoside t...		Potri.009G156000 [exp]	12.00	0.9274
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Potri.019G021800 [exp]	13.49	0.9221	Pt-CDC20.3
AT1G18370		HIK, ATNACK1	HINKEL, ARABIDOPSIS NPK1-ACTIV...		Potri.012G054400 [exp]	13.96	0.9276
AT1G63990		SPO11-2	sporulation 11-2 (.1)		Potri.001G099100 [exp]	15.62	0.8853

Compare expression of checked genes

Potri.016G085600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.