Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37080 474 / 2e-161 RIP3 ROP interactive partner 3 (.1) AT5G60210 402 / 1e-133 RIP5 ROP interactive partner 5 (.1.2) AT3G53350 163 / 2e-44 RIP4 ROP interactive partner 4 (.1.2.3) AT1G78430 81 / 2e-16 RIP2 ROP interactive partner 2 (.1) AT1G65010 79 / 7e-15 Plant protein of unknown function (DUF827) (.1) AT4G27595 71 / 2e-12 Plant protein of unknown function (DUF827) (.1) AT1G17140 67 / 1e-11 RIP1, ICR1 ROP INTERACTIVE PARTNER 1, interactor of constitutive active rops 1 (.1.2) AT5G16730 48 / 2e-05 Plant protein of unknown function (DUF827) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G131400 [exp] 969 / 0 AT2G37080 473 / 1e-160 ROP interactive partner 3 (.1) Potri.019G047600 [exp] 95 / 4e-20 AT5G16730 608 / 0.0 Plant protein of unknown function (DUF827) (.1) Potri.013G079000 [exp] 91 / 1e-18 AT5G16730 619 / 0.0 Plant protein of unknown function (DUF827) (.1) Potri.001G377900 [exp] 74 / 8e-14 AT1G78430 238 / 5e-76 ROP interactive partner 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026482 [exp] 603 / 0 AT2G37080 435 / 7e-147 ROP interactive partner 3 (.1) Lus10023173 [exp] 415 / 2e-139 AT2G37080 315 / 2e-101 ROP interactive partner 3 (.1) Lus10019912 [exp] 396 / 3e-133 AT2G37080 264 / 7e-83 ROP interactive partner 3 (.1) Lus10015064 [exp] 173 / 4e-48 AT2G37080 155 / 4e-42 ROP interactive partner 3 (.1) Lus10011643 [exp] 128 / 2e-33 AT5G60210 152 / 6e-43 ROP interactive partner 5 (.1.2) Lus10020373 [exp] 61 / 3e-09 AT5G16730 610 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10009550 [exp] 51 / 2e-06 AT5G16730 571 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10005576 [exp] 47 / 5e-05 AT1G17140 238 / 4e-76 ROP INTERACTIVE PARTNER 1, interactor of constitutive active rops 1 (.1.2) Lus10013708 [exp] 44 / 0.0003 AT1G17140 229 / 8e-73 ROP INTERACTIVE PARTNER 1, interactor of constitutive active rops 1 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.016G085900.7 pacid=42808886 polypeptide=Potri.016G085900.7.p locus=Potri.016G085900 ID=Potri.016G085900.7.v4.1 annot-version=v4.1 ATGCAGACACCAAAAGCAAAAACCAGCTCTTTGGAAGTGCCTCAGAAGAAATCTCCCGCAACACCTCGAACTCGGCAACTCAAAACACCTGGATCAGAAA ACAACTCTGTCTCCCCAAATCCAGCAAGTAGGACCCCGAAAGACAGAAGTCCTAAAGTCACTGAACGCAGATTATCTCAAAGTCCAGCAACTGAGAAGAA GCGCCCAAGCAGAATATCTGAATTGGAAACACAGCTTGCACAACTCCAGGAGGATCTGAAGAAGGCAAAAGATCAACTGAACGCATCAGAGTCATGGAAG AGACGAGCCCATCAGGAAGCTGAAGACACCAAGAAGCAGCTTTTAACCATGTCAGAGAAATTTGAGGAATCACAACAGCAATTGATGGAGCTTTCTAGTT CTGAAGATGTCCGTGTTCAAGAGCTCCGTAAAGTCTCCCATGATCGTGATAAAGCTTGGCAGTCTGAACTGGAGGCCATGCAGAAGCAGCACTCAATTGA TTCTGCAGCCCTGGCTTCTGCCATGAATGAAGTCCAGAGGCTCAAAAATCAGCTGGAAATGGTAGTGGAATCTGAAGCTTCCCAAACAAAACATGCAGAA TCAGCATATGCTGAATTACAAGGGCTGAGACTGGAACTAACTGAAACTCTCTCCCTTGTTGAAAAAATGAAAACTGAGCTCAGTGATACCAGGGAATCTG AAGCTCAGGCCCTGGAACTTGTTAGTAAAACTCAAAAGCAATTGGAAGAAGCAAATGCAACTGCTGAAATGCTGCAGGCAGATGACGTCAAAGCCATGGA GGCTTACAGGTCCCTATCATTGGAGCTGGAACAGTCAAGAGCTCAAGTAAAACCCTTGGAGGAACTTGTGAGTAAACTGCAAGCAGATCCAGCGAACATT TGTGGGAAAACAGTCATGAATCCTACAGGGGATGTTGAAGTTTTGCATGAAAGTGTAGAAAATGAGGAAACAAAACAGCTCAAAGCAGAAATGAACCTTT TGAAACATGAAGTAGGTCAGTTGAAATCCGCACTAGAAGCATCTGAGACCAGGTACCAGGAAGAATATATTCAAAGCACATTGCAGATTAGAAGCGCCTA TGAACAAGTTGAACGTACAAAGTTGGAATCAGGCCACAGAGAGGCTGAATTGGAAGCTGAATTGAAGAAAGCCAAAAACAATATTGAAGAATTGAGGGCT AACCTGATGGATAAGGAAACTGAATTGCAGGGCATTTCTGAGGAGAATGAGGGACTGGCTTTAAAGATTGAGAAAAATCAGCCAAGTGAGAGGGAATCTG AACTTGCAATGGAGCTGAAAAAGTTAGAGCATGATCTGGCAGAGTTGAAGGCGAGCTTGTTGGATAAGGAAGCACGGTTGCAGAGTGTAGCAGAGGAAAA TGAAACACTCTGGAAAGAAATCAAGAAAGGGGAAATGGAGAAAAGTAAGGTCAATGATGAAGCTGTTGCATTGGCAGAAACTGCAAGGGCTGCAGAACAC GAGGCTCTGATGAAACTTGGTTATCTGACAGAGGAAGCAGATAAAAGTAGCAGAAGAGTAGCAAGGGTGACTGAGCAGCTGGATGCAGCTCAGGCAGCAA ACACAGAAATGGAGGCTGAATTGAGGAGGTTAAAGGTGCAGTCAGACCAATGGAGGAAAGCCGCTGAGGCAGCTGCTGCTATGCTTTCAACTGGGAACAA CGGCAAATTTGTAGAGAGAACAGGTTCTCTTGACAACAACTATAATCCTATTCCTGGAAATATGGGCTCGCCCTTCTCTGAAGATATGGATGATGACTCT CCAAAGAAGAAAAACGGGAACATGTTGAAGAAAATTGGGGTCTTGTGGAAGAGGGGTCAGAAGTAG
AA sequence Show only first row Show all	>Potri.016G085900.7 pacid=42808886 polypeptide=Potri.016G085900.7.p locus=Potri.016G085900 ID=Potri.016G085900.7.v4.1 annot-version=v4.1 MQTPKAKTSSLEVPQKKSPATPRTRQLKTPGSENNSVSPNPASRTPKDRSPKVTERRLSQSPATEKKRPSRISELETQLAQLQEDLKKAKDQLNASESWK RRAHQEAEDTKKQLLTMSEKFEESQQQLMELSSSEDVRVQELRKVSHDRDKAWQSELEAMQKQHSIDSAALASAMNEVQRLKNQLEMVVESEASQTKHAE SAYAELQGLRLELTETLSLVEKMKTELSDTRESEAQALELVSKTQKQLEEANATAEMLQADDVKAMEAYRSLSLELEQSRAQVKPLEELVSKLQADPANI CGKTVMNPTGDVEVLHESVENEETKQLKAEMNLLKHEVGQLKSALEASETRYQEEYIQSTLQIRSAYEQVERTKLESGHREAELEAELKKAKNNIEELRA NLMDKETELQGISEENEGLALKIEKNQPSERESELAMELKKLEHDLAELKASLLDKEARLQSVAEENETLWKEIKKGEMEKSKVNDEAVALAETARAAEH EALMKLGYLTEEADKSSRRVARVTEQLDAAQAANTEMEAELRRLKVQSDQWRKAAEAAAAMLSTGNNGKFVERTGSLDNNYNPIPGNMGSPFSEDMDDDS PKKKNGNMLKKIGVLWKRGQK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Potri.016G085900 [exp]	0	1
AT1G19870		IQD32	IQ-domain 32 (.1)		Potri.005G236200 [exp]	1.73	0.9326
AT1G08190		ZIP2, ATVPS41, ...	ZIGZAG SUPPRESSOR 2, vacuolar ...		Potri.009G002400 [exp]	3.00	0.8875
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Potri.016G051900 [exp]	6.48	0.9077
AT4G27430		CIP7	COP1-interacting protein 7 (.1...		Potri.011G122900 [exp]	9.79	0.8920	Pt-CIP7.1
AT1G76250			unknown protein		Potri.005G249600 [exp]	9.94	0.9047
AT5G19390			Rho GTPase activation protein ...		Potri.001G275200 [exp]	10.19	0.8419
AT4G10550			Subtilase family protein (.1.2...		Potri.001G450401 [exp]	10.86	0.8575
					Potri.002G226400 [exp]	12.12	0.8609
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Potri.007G047000 [exp]	13.11	0.9031
AT2G22560			Kinase interacting (KIP1-like)...		Potri.005G147300 [exp]	13.19	0.8730

Compare expression of checked genes

Potri.016G085900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.