Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26500 637 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62470 223 / 1e-65 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62540 221 / 8e-65 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G14820 220 / 1e-64 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22670 138 / 6e-35 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74900 125 / 3e-31 OTP43 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G77360 123 / 3e-30 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G52640 122 / 7e-30 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62720 117 / 3e-28 AtNG1 novel gene 1, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G53700 118 / 7e-28 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G121400 [exp] 223 / 3e-65 AT3G62470 737 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G242200 [exp] 129 / 6e-32 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050300 [exp] 128 / 1e-31 AT1G12700 466 / 5e-156 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G102700 [exp] 127 / 2e-31 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050400 [exp] 127 / 3e-31 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046000 [exp] 126 / 9e-31 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271200 [exp] 125 / 2e-30 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050240 [exp] 124 / 3e-30 AT1G12700 465 / 1e-155 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G181900 [exp] 123 / 3e-30 AT1G77360 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003461 [exp] 229 / 2e-67 AT3G62470 718 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015741 [exp] 225 / 6e-66 AT3G62470 725 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001588 [exp] 125 / 3e-30 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003424 [exp] 122 / 4e-29 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10026558 [exp] 119 / 3e-28 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001633 [exp] 116 / 1e-27 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013841 [exp] 117 / 2e-27 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10034419 [exp] 115 / 2e-27 AT1G73400 684 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021989 [exp] 117 / 3e-27 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030887 [exp] 114 / 7e-27 AT1G52640 658 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.016G086100.4 pacid=42810098 polypeptide=Potri.016G086100.4.p locus=Potri.016G086100 ID=Potri.016G086100.4.v4.1 annot-version=v4.1 ATGATCACGATGCGTTTTTTGTTCATGAAACCCCTTCTTAACTCCTTCTCTCACCGCCAGCACCACCGTTGTCTTTGCCTCTTAACTACTGAATCAAGCC AAACGTACCCATCTTCACCATCCCCAGTTAATGAAGATCACCTTCTCCGGGTTTGCACCGTCCTCTTCCAACAACAAGACTCTTCAGACTTCAAACTCCG TAACAAACTTTCCTCCATTGATTTCAACCTTACCCATGAGTTCTTCCTCCAAGTTTGCAACAAATTCCCAGCCTCTTGGCGCCCCGTGCATCGCTTCTTT CAATACACACAACAGATGCCTTGTTCACGTTTCACTCACACTTCCGTGTCTTTAAACAAGATGCTTGACATCTTTGGAAGATCAAGAAACCTTGATCTCT TGTGGGGTGCTGTCCAGGAAATGGCAAAACGTGGTTTGGTTAATGATAAGACTTTTATAATTGTTTTGAAAGCACTAGCTTCAGCAAGGGAGTTGAAAAA ATGTGCTGAATTCTTTCACTTTATGAATGAGCATGGATGCGAGTATAGAGTTGAGAGGTTAAACAAGGTGGTGGAGAATTTGTGCAAGGGTAAGCTTGTT GAGGAGGCAAAGTTTGTGGTTTTGAAGTTGAAGGATTGGATTAGGCCTGACGGGGTTACCTATGGGTGGTTGGTTAAGGGGTTCTGTGATGTTGGTGAGT TGATCGAGGCTTCAAAGATCTGGAATTTGATGGTGGACGAGAGCATCGAGCCGGAGATCGAGGTGTTTGAGAAAATGATGGAGACACTTTTCAAGAGGAA TGAGTATGATGAGGCTTTGAAGGTGTTTCAGACGATGAGGGTGAATAGAATGGATGATTTAGCGCTCTCCACTTACAGGCTTGTGATTGATTGGATGTGT AGAAAAGGTAAAGTTGTGCAAGCGCAGATGGTGTTTGATGAAATGCGCCAGAGAGGAATTCAAGCAGATAATTCAACATTGGGGTCCCTAGTTTATGGCC TTCTAACAAGAGGCCGGCATGCAGAGGCTCATAAAGTTGTCGAAAGGATTGAAAAAACAGACATTAGCGTGTATCATGGACTGATTAAGGGGCTCGTAAG GTCAAGGAGGGCGAGTGAAGCAACACAGGTGTTCAGAGAGATGATTAATAGAGGCTGTGAGCCTACAATGCACACATATATTATGCTATTGCAAGGGCAT TTAGGGAAGAGAGGGAGGAAGGGGCCAGACCCACTTGTGAATTTTGAGTCTATTTTTGTTGGAGGTTTGATTAAGGCTGGGAAGTCATTAGAAGCCACCA AATACGTAGAGAGGACAATGAAAGGATCACTTGAGGTGCCTAGGTTTGATTACAATAAGTTTTTGCATTATTATTCAAGTGAGGAAGGTGTGGTTATGTT TAAGGAGGTGGGGAAGAAATTGAGGGAGGCAGGGTTTGTTGATTTGGCGGATATACTGCAGAGGTATGGGGAGAAAATGGCTACTAGAGAGAGGAGGAGA AGACGTTCTGAGTTAGTTAATGGCTCCGAATAA
AA sequence Show only first row Show all	>Potri.016G086100.4 pacid=42810098 polypeptide=Potri.016G086100.4.p locus=Potri.016G086100 ID=Potri.016G086100.4.v4.1 annot-version=v4.1 MITMRFLFMKPLLNSFSHRQHHRCLCLLTTESSQTYPSSPSPVNEDHLLRVCTVLFQQQDSSDFKLRNKLSSIDFNLTHEFFLQVCNKFPASWRPVHRFF QYTQQMPCSRFTHTSVSLNKMLDIFGRSRNLDLLWGAVQEMAKRGLVNDKTFIIVLKALASARELKKCAEFFHFMNEHGCEYRVERLNKVVENLCKGKLV EEAKFVVLKLKDWIRPDGVTYGWLVKGFCDVGELIEASKIWNLMVDESIEPEIEVFEKMMETLFKRNEYDEALKVFQTMRVNRMDDLALSTYRLVIDWMC RKGKVVQAQMVFDEMRQRGIQADNSTLGSLVYGLLTRGRHAEAHKVVERIEKTDISVYHGLIKGLVRSRRASEATQVFREMINRGCEPTMHTYIMLLQGH LGKRGRKGPDPLVNFESIFVGGLIKAGKSLEATKYVERTMKGSLEVPRFDYNKFLHYYSSEEGVVMFKEVGKKLREAGFVDLADILQRYGEKMATRERRR RRSELVNGSE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G26500			Pentatricopeptide repeat (PPR)...		Potri.016G086100 [exp]	0	1
AT4G01570			Tetratricopeptide repeat (TPR)...		Potri.002G183100 [exp]	1.73	0.9076
AT3G12770		MEF22	mitochondrial editing factor ...		Potri.013G152000 [exp]	3.16	0.8880
AT1G02060			Tetratricopeptide repeat (TPR)...		Potri.014G056400 [exp]	10.00	0.8314
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.009G035100 [exp]	10.19	0.8639
AT1G71420			Tetratricopeptide repeat (TPR)...		Potri.013G098800 [exp]	10.67	0.8614
AT5G55600			agenet domain-containing prote...		Potri.006G017400 [exp]	10.95	0.8460
AT4G08210			Pentatricopeptide repeat (PPR-...		Potri.002G087400 [exp]	11.40	0.8636
AT5G14080			Tetratricopeptide repeat (TPR)...		Potri.001G326800 [exp]	12.72	0.8643
AT3G18640	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.007G107800 [exp]	12.96	0.8497
					Potri.018G133300 [exp]	12.96	0.8435

Compare expression of checked genes

Potri.016G086100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.