Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03040 372 / 7e-125 IQD2 IQ-domain 2 (.1.2.3) AT3G09710 293 / 1e-94 IQD1 IQ-domain 1 (.1.2) AT3G52290 276 / 3e-88 IQD3 IQ-domain 3 (.1) AT2G26410 164 / 1e-44 IQD4 IQ-domain 4 (.1) AT3G22190 120 / 1e-29 IQD5 IQ-domain 5 (.1.2) AT3G59690 119 / 1e-28 IQD13 IQ-domain 13 (.1) AT4G00820 115 / 1e-27 IQD17 IQ-domain 17 (.1) AT2G26180 114 / 2e-27 IQD6 IQ-domain 6 (.1) AT2G43680 113 / 1e-26 IQD14 IQ-domain 14 (.1.2.3) AT2G33990 107 / 2e-26 IQD9 IQ-domain 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G131100 [exp] 721 / 0 AT5G03040 369 / 1e-123 IQ-domain 2 (.1.2.3) Potri.010G218100 [exp] 416 / 1e-141 AT5G03040 323 / 8e-106 IQ-domain 2 (.1.2.3) Potri.006G226600 [exp] 137 / 1e-35 AT2G26180 386 / 1e-131 IQ-domain 6 (.1) Potri.013G127200 [exp] 135 / 2e-34 AT3G59690 447 / 5e-153 IQ-domain 13 (.1) Potri.001G215200 [exp] 131 / 2e-33 AT3G22190 272 / 4e-87 IQ-domain 5 (.1.2) Potri.019G095700 [exp] 130 / 1e-32 AT3G59690 433 / 2e-147 IQ-domain 13 (.1) Potri.009G015800 [exp] 119 / 4e-29 AT3G22190 286 / 9e-93 IQ-domain 5 (.1.2) Potri.011G153400 [exp] 118 / 2e-28 AT4G00820 331 / 3e-107 IQ-domain 17 (.1) Potri.002G178500 [exp] 117 / 6e-28 AT4G00820 458 / 1e-156 IQ-domain 17 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019916 [exp] 465 / 8e-162 AT5G03040 410 / 9e-141 IQ-domain 2 (.1.2.3) Lus10026486 [exp] 451 / 3e-154 AT5G03040 414 / 4e-140 IQ-domain 2 (.1.2.3) Lus10036508 [exp] 368 / 8e-123 AT5G03040 343 / 1e-113 IQ-domain 2 (.1.2.3) Lus10041419 [exp] 364 / 2e-122 AT5G03040 345 / 2e-115 IQ-domain 2 (.1.2.3) Lus10015067 [exp] 300 / 1e-99 AT5G03040 206 / 2e-63 IQ-domain 2 (.1.2.3) Lus10015068 [exp] 181 / 5e-54 AT5G03040 202 / 4e-63 IQ-domain 2 (.1.2.3) Lus10013362 [exp] 125 / 2e-31 AT3G22190 338 / 4e-113 IQ-domain 5 (.1.2) Lus10025593 [exp] 126 / 3e-31 AT3G59690 498 / 1e-172 IQ-domain 13 (.1) Lus10027059 [exp] 125 / 7e-31 AT3G59690 496 / 1e-171 IQ-domain 13 (.1) Lus10013522 [exp] 117 / 3e-28 AT2G26180 403 / 2e-138 IQ-domain 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF00612 [poplar] [flax] IQ IQ calmodulin-binding motif
Representative CDS sequence Show only first row Show all	>Potri.016G086300.6 pacid=42809526 polypeptide=Potri.016G086300.6.p locus=Potri.016G086300 ID=Potri.016G086300.6.v4.1 annot-version=v4.1 ATGGGGAGGAAAGGAAAATGGTTTTCTAGTGTAAAGAAAGCTCTTAGCCCTGATCCCAAGGAGAAGACAGACCAGAAATCAAATAAATCAAAGAAGAAAT GGTTTGGAAAGCAACAACTGGATTCGGATTCCACTTCTTTAGAAAATGTCACAATGCTGTCTCCTCCTCCCCAACCAGAAGAAGTGAAATTAATTGAGAC AACAGATGAAGTGAACCAGCATACTTTCCCTGTTCCAGTTGCCACTGCTGCAGTACCTGAGCCTGCTCCGACTACTGTCCAAACCAATATTGAGGTTGTT CAACTGACCAAGGTAAACAAATATGCTGGCAAATCAAAGGAAGAAGAGGCGGCAATTAAGATTCAAACAACATTCAGAGGATACATGGCCAGAAGAGCAT TGCGGGCTCTGAGAGGGTTGGCGAGGCTCAAATTTCTGATGGAAGGGCCTAGAATAAAAAGGCAAGCAACACATACCCTCCGCTGCATGCAGACTCTAGC TCGGGTGCAGTCACAGATTCACACAAGGAGGATCAGAATGTCAGAAGAGAACCAGGCCCTACAGAGACAACTCCTACAGAAGCATGCCAAAGAGCTTGAA AACTTGCGGATTGGAGAGGAATGGGATGACAGTCTACAGTCGAAGGAACAGATTGAAGCTAGCCTGCTAAACAAGTTTGAGGCCGCTACGAGAAGGGAAA GAGCACTGGCTTATGCTTTCTCTCATCAGCAAACTTTGAAGAATTCTTCACGATCTGCAAACCCCATGTTCATGAATGGGAATCCTTCCTGGGGTTGGAG CTGGTTGGAACGATGGATGGCAGCCCATCCATGGGAGAGCCGGAGCTTGATGGAGAAAGAACACAATAACGACCACTCATCTGTAAAGAGTGCCAGCCGC AGCATTACTGGAGGAGAAATAAGCAAATCTTATGCTCGCTACCAGCTCAATTCTGATAAATTAACTCCAAGAGAAAGTGAAAGGCCAACCAAAACCACGA ACCTACAGTCCCCATCAACTCCTAAAAAGCCAGCTGCTTCTACAGTTGCTAGAAAATTGAAGTCAGCAAGCCCAAGGAGTAACATTGGGGGCATTGAAGA TGACTCTAGAAGCATGGTCAGTGTTCAATCAGATCGTAGTAGAAGGCATAGCATTGCTGGTTCATTTGTGCGAGATGATGAGAGCCTCGGAAGCTCTCCA GCGCTTCCAAGTTACATGGTACCTACACAATCTGCAAGAGCAAAGTCCAGAATACATAGCCTATTGGGAGCAGAAAAGGACGGGACACCAGAAAAGGAAA AGGGTTCCTCTGGGCATACAAAGAAACGGCTTTCATACCCTCCATCGCCAGCCAAAGGAAGGAGGTATTCTGGCCCCCCAAAGTTGGAAAGCAGCTTCAA TGCAAGAAATAGCGTGGCTGCTGGCGAGGGAATTTAA
AA sequence Show only first row Show all	>Potri.016G086300.6 pacid=42809526 polypeptide=Potri.016G086300.6.p locus=Potri.016G086300 ID=Potri.016G086300.6.v4.1 annot-version=v4.1 MGRKGKWFSSVKKALSPDPKEKTDQKSNKSKKKWFGKQQLDSDSTSLENVTMLSPPPQPEEVKLIETTDEVNQHTFPVPVATAAVPEPAPTTVQTNIEVV QLTKVNKYAGKSKEEEAAIKIQTTFRGYMARRALRALRGLARLKFLMEGPRIKRQATHTLRCMQTLARVQSQIHTRRIRMSEENQALQRQLLQKHAKELE NLRIGEEWDDSLQSKEQIEASLLNKFEAATRRERALAYAFSHQQTLKNSSRSANPMFMNGNPSWGWSWLERWMAAHPWESRSLMEKEHNNDHSSVKSASR SITGGEISKSYARYQLNSDKLTPRESERPTKTTNLQSPSTPKKPAASTVARKLKSASPRSNIGGIEDDSRSMVSVQSDRSRRHSIAGSFVRDDESLGSSP ALPSYMVPTQSARAKSRIHSLLGAEKDGTPEKEKGSSGHTKKRLSYPPSPAKGRRYSGPPKLESSFNARNSVAAGEGI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Potri.016G086300 [exp]	0	1
AT2G27060			Leucine-rich repeat protein ki...		Potri.004G197500 [exp]	1.41	0.9350
AT3G51580			unknown protein		Potri.006G108400 [exp]	2.82	0.9160
AT5G16730			Plant protein of unknown funct...		Potri.019G047600 [exp]	4.47	0.9228
AT4G18640		MRH1	morphogenesis of root hair 1, ...		Potri.011G067400 [exp]	7.34	0.9222
AT3G05320			O-fucosyltransferase family pr...		Potri.012G118800 [exp]	11.83	0.8920
AT4G19110			Protein kinase superfamily pro...		Potri.003G101600 [exp]	13.96	0.8904
AT3G15430			Regulator of chromosome conden...		Potri.011G121900 [exp]	15.49	0.8515
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.001G157700 [exp]	15.87	0.9019
AT5G51060		ATRBOHC, RHD2	ROOT HAIR DEFECTIVE 2, A. THAL...		Potri.012G111600 [exp]	17.05	0.8064	RHD2.1
AT2G46710			Rho GTPase activating protein ...		Potri.002G176800 [exp]	18.89	0.8981

Compare expression of checked genes

Potri.016G086300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.