Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37090 473 / 3e-168 IRX9 IRREGULAR XYLEM 9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT1G27600 244 / 5e-78 IRX9-L, I9H IRREGULAR XYLEM 9-LIKE, IRREGULAR XYLEM 9 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) AT5G67230 90 / 2e-19 IRX14-L, I14H IRREGULAR XYLEM 14-LIKE, IRREGULAR XYLEM 14 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT4G36890 82 / 5e-17 IRX14 irregular xylem 14, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G131000 [exp] 635 / 0 AT2G37090 439 / 7e-155 IRREGULAR XYLEM 9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.006G240200 [exp] 258 / 1e-82 AT1G27600 374 / 2e-127 IRREGULAR XYLEM 9-LIKE, IRREGULAR XYLEM 9 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Potri.002G107300 [exp] 226 / 7e-71 AT1G27600 477 / 1e-168 IRREGULAR XYLEM 9-LIKE, IRREGULAR XYLEM 9 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Potri.005G141500 [exp] 75 / 1e-14 AT5G67230 563 / 0.0 IRREGULAR XYLEM 14-LIKE, IRREGULAR XYLEM 14 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.007G047500 [exp] 74 / 3e-14 AT5G67230 543 / 0.0 IRREGULAR XYLEM 14-LIKE, IRREGULAR XYLEM 14 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019917 [exp] 441 / 3e-155 AT2G37090 417 / 3e-146 IRREGULAR XYLEM 9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10026487 [exp] 418 / 2e-146 AT2G37090 409 / 8e-143 IRREGULAR XYLEM 9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10015069 [exp] 247 / 4e-80 AT2G37090 236 / 9e-76 IRREGULAR XYLEM 9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10007692 [exp] 225 / 4e-70 AT1G27600 498 / 2e-176 IRREGULAR XYLEM 9-LIKE, IRREGULAR XYLEM 9 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10032817 [exp] 224 / 6e-70 AT1G27600 484 / 3e-171 IRREGULAR XYLEM 9-LIKE, IRREGULAR XYLEM 9 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10010268 [exp] 76 / 1e-14 AT5G67230 634 / 0.0 IRREGULAR XYLEM 14-LIKE, IRREGULAR XYLEM 14 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10041601 [exp] 75 / 2e-14 AT5G67230 632 / 0.0 IRREGULAR XYLEM 14-LIKE, IRREGULAR XYLEM 14 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10011500 [exp] 67 / 4e-12 AT5G67230 379 / 6e-130 IRREGULAR XYLEM 14-LIKE, IRREGULAR XYLEM 14 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10019325 [exp] 59 / 3e-09 AT5G67230 335 / 5e-127 IRREGULAR XYLEM 14-LIKE, IRREGULAR XYLEM 14 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF03360 [poplar] [flax] Glyco_transf_43 Glycosyltransferase family 43
Representative CDS sequence Show only first row Show all	>Potri.016G086400.1 pacid=42810157 polypeptide=Potri.016G086400.1.p locus=Potri.016G086400 ID=Potri.016G086400.1.v4.1 annot-version=v4.1 ATGGGCTCTGTGGAAAGATCAAAGAGGAGAGTTCAGTTATGGAAGAAAGCTATAGTTCATTTTGGTTTGTGTTTTGTTATGGGGTTTTTTACAGGTTTCG CTCCAGCAGGCAAGGCTTCAATTTTTACTAGTCATGTTGCTGCATCAAATAAATCGCAATCCTTGCCGCAACCTGTTGAAATGACGTTGCACCAGCAGGC AGCAAGTACACCACATGCTAGTAATGTCAACAGAAGTTTGATAGCTGAAACTGCAGTACCAGCTCCACCAAGCTCTAAGGAATCTGAACATGCAACATTC TTGGGGAAAGAAGAAACAGAATCCAAGTTAGCGCCAAGACGACTGGCAATAATCGTTACGCCAACAAGCACTAAAGATCCGTATCAAGGGGTTTTTTTGA GGAGGTTAGCTAATACGATCAGGTTGGTTCCTCCACCATTATTGTGGATTGTTGTGGAAGGGCAATCAGATTCAGATGAAGTATCGGAGGTCCTTAGGAA AACAGGTATTATGTATAGGCATTTGGTGTTCAAGGAGAATTTTACAGATCCCGAAGCAGAGTTGGATCATCAAAGGAATGTTGCATTAAGGCACATTGAA AAACACAGGCTGAGTGGGATTGTTCATTTTGCCGGGCTTTCCAATGTTTACGATCTAGGCTTCTTTGACGAGATTAGACAAATTGAGGTGTTTGGAACAT GGCCAATGGCATTACTTTCAGCAAACGAGAAGAAAGTGATAATTGAAGGACCTGTATGTGATTCCTCGCAGGTTATCGGCTGGCATCTAAGGAAAATGAA CAACGAAACGGATAAAAGGCCTCCAATTCATATTTCAAGTTTTGGATTCAACAGCTCAATCCTCTGGGATCCTGAGAGATGGGGTCGCCCTTCTTCAGTC CAGCAAACCTCACAGAACTCAATCAAATTCGTCAAACAAGTAGCTCTTGAAGACGAGACAAAGTTAAAGGGAATCCCACCAGAGGACTGTTCAAAAATCA TGCTTTGGCGTCTTAATCTTCCTACTTCAAAATCACCAAGTTATCAGGAAAATCAAGAAGACAAAATCGTGTAG
AA sequence Show only first row Show all	>Potri.016G086400.1 pacid=42810157 polypeptide=Potri.016G086400.1.p locus=Potri.016G086400 ID=Potri.016G086400.1.v4.1 annot-version=v4.1 MGSVERSKRRVQLWKKAIVHFGLCFVMGFFTGFAPAGKASIFTSHVAASNKSQSLPQPVEMTLHQQAASTPHASNVNRSLIAETAVPAPPSSKESEHATF LGKEETESKLAPRRLAIIVTPTSTKDPYQGVFLRRLANTIRLVPPPLLWIVVEGQSDSDEVSEVLRKTGIMYRHLVFKENFTDPEAELDHQRNVALRHIE KHRLSGIVHFAGLSNVYDLGFFDEIRQIEVFGTWPMALLSANEKKVIIEGPVCDSSQVIGWHLRKMNNETDKRPPIHISSFGFNSSILWDPERWGRPSSV QQTSQNSIKFVKQVALEDETKLKGIPPEDCSKIMLWRLNLPTSKSPSYQENQEDKIV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Potri.016G086400 [exp]	0	1
AT1G04750		ATVAMP7B, ATVAM...	VESICLE-ASSOCIATED MEMBRANE PR...		Potri.003G177700 [exp]	2.23	0.9489	SAR1.5
AT2G37585			Core-2/I-branching beta-1,6-N-...		Potri.006G263000 [exp]	2.64	0.9391
AT3G61750			Cytochrome b561/ferric reducta...		Potri.014G098700 [exp]	4.00	0.9466
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Potri.009G099800 [exp]	5.29	0.9421	CAM1
AT1G75280			NmrA-like negative transcripti...		Potri.002G034400 [exp]	6.00	0.9367
AT3G19150		ACK1, ICK4, KRP...	ARABIDOPSIS CDK INHIBITOR 1, K...		Potri.005G137500 [exp]	6.48	0.9085
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.008G012400 [exp]	6.70	0.9418
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Potri.007G135300 [exp]	6.92	0.9407
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Potri.005G141500 [exp]	6.92	0.9376
AT4G34500			Protein kinase superfamily pro...		Potri.004G154000 [exp]	7.00	0.9030

Compare expression of checked genes

Potri.016G086400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.