Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03070 801 / 0 IMPA-9 importin alpha isoform 9 (.1) AT1G02690 198 / 1e-56 IMPA-6 importin alpha isoform 6 (.1.2) AT1G09270 191 / 3e-54 IMPA-4 importin alpha isoform 4 (.1.2.3) AT3G06720 184 / 1e-51 IMPA1, IMPA-1, AIMPALPHA, ATKAPALPHA, AT-IMP importin alpha isoform 1 (.1.2) AT4G16143 182 / 1e-50 IMPA-2 importin alpha isoform 2 (.1.2) AT4G02150 180 / 3e-50 IMPA-3, MOS6, ATIMPALPHA3 MODIFIER OF SNC1, 6, IMPORTIN ALPHA ISOFORM 3, IMPORTIN ALPHA 3, ARM repeat superfamily protein (.1) AT3G05720 171 / 5e-47 IMPA-7 importin alpha isoform 7 (.1) AT5G49310 166 / 4e-45 IMPA-5 importin alpha isoform 5 (.1) AT5G52000 119 / 4e-29 IMPA-8 importin alpha isoform 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G020400 [exp] 193 / 5e-55 AT3G06720 880 / 0.0 importin alpha isoform 1 (.1.2) Potri.013G007300 [exp] 192 / 1e-54 AT1G09270 877 / 0.0 importin alpha isoform 4 (.1.2.3) Potri.013G010900 [exp] 192 / 1e-54 AT3G06720 869 / 0.0 importin alpha isoform 1 (.1.2) Potri.008G214100 [exp] 189 / 1e-53 AT4G16143 881 / 0.0 importin alpha isoform 2 (.1.2) Potri.010G001400 [exp] 188 / 3e-53 AT4G16143 849 / 0.0 importin alpha isoform 2 (.1.2) Potri.002G199600 [exp] 177 / 5e-49 AT3G06720 858 / 0.0 importin alpha isoform 1 (.1.2) Potri.014G124200 [exp] 176 / 1e-48 AT3G06720 868 / 0.0 importin alpha isoform 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008480 [exp] 770 / 0 AT5G03070 738 / 0.0 importin alpha isoform 9 (.1) Lus10001480 [exp] 767 / 0 AT5G03070 729 / 0.0 importin alpha isoform 9 (.1) Lus10010028 [exp] 192 / 1e-54 AT3G06720 862 / 0.0 importin alpha isoform 1 (.1.2) Lus10031398 [exp] 191 / 4e-54 AT3G06720 925 / 0.0 importin alpha isoform 1 (.1.2) Lus10010933 [exp] 191 / 5e-54 AT3G06720 922 / 0.0 importin alpha isoform 1 (.1.2) Lus10016850 [exp] 188 / 4e-53 AT4G16143 858 / 0.0 importin alpha isoform 2 (.1.2) Lus10037722 [exp] 186 / 2e-52 AT3G06720 884 / 0.0 importin alpha isoform 1 (.1.2) Lus10036330 [exp] 177 / 7e-49 AT3G06720 874 / 0.0 importin alpha isoform 1 (.1.2) Lus10036452 [exp] 176 / 7e-49 AT4G16143 825 / 0.0 importin alpha isoform 2 (.1.2) Lus10041124 [exp] 155 / 1e-41 AT4G16143 733 / 0.0 importin alpha isoform 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00514 [poplar] [flax] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Potri.016G086600.1 pacid=42810193 polypeptide=Potri.016G086600.1.p locus=Potri.016G086600 ID=Potri.016G086600.1.v4.1 annot-version=v4.1 ATGGCTGAAGATGGATTGAATCCTCACCGAAGAGACCCTATCAAGTCTTCAGTTGGTAATGTTGCGGCGCATAGGAGGAGGCAAAATGCGGTGGCGGTGG GGAAGGAAAGGAGAGAATCGTTGGTGCGTGCGAAGCGTCTTTGTAGAGTGGGTCCTAGTTGTGATGATAGTGACATAAGTATTGAAAATGACATGATAAT TGATGAAGAGCAATCAATTTTGGAGGCTCAAACTTCGTCGGCAGTTGAAGAGTTGAAGTCTGCTGTTTCTTTTCAGGGAAAAGGTGCAATGCAGAAGCTA GTTGGTGCCCTCCGGGAGATGAGACGTTTGCTGTCAAAATCTGAATTCCCTCCTGTTGAAGCTGCTATTAAAGCTGGAGCAATCCCCTTGCTTGTGCAGT GTCTCTCATTTGGCTCTCCAGATGAACAGTTACTTGAGGCAGCATGGTGCCTTACAAATATTGCAGCAGGAAAACCAGAAGAAACAAAAGCATTATTGCC TGCTTTACCACTGCTTATTGCACATCTTGGAGAAAAGAGTTCCTTACCTGTGGCTGAACAGTGCGCATGGGCATTGGGAAATGTTGCTGGTGAAGGAGAA GAGTTGAGAAGTGTTTTGCTATGTCAAGGTGCCTTACCACCTCTTGCAAGAATGATGCTGCCAAACAAGGGTTCAACTGTGAGAACAGCTGCTTGGGCAT TGTCAAACCTAATCAAGGGACCAGATCATAAAGCTGCCACAGAACTCATTAGAGTTGATGGGGTTCTAGATGCAATTCTTCGGCACTTAAGAAAAGCGGA TGAGGAATTGGCAACTGAAGTAGCATGGGTGGTTGTGTATCTCTCAGCCCTTTCGAATGTTGCTACCAGTATGCTGGTTAAAAGTGATGCCCTTCAGCTG CTTGTACAAAGATTAGCATCATCAAATAGCTTGCAATTGCTTATTCCGGTCTTACGAAGTTTAGGTAATGTAATAGCTGGTGATTCACACACAATAGTTG CTGTTCTTCTTCCTGGGTGCGAAATCACAGATAATGTCATTGAGGTCCTTGTAAAATGTTTGAAGAGTGAGCACCGAGTCTTGAAGAAGGAAGCTGCTTG GGTATTATCTAACATTGCAGCTGGTTCGATTGAGCACAAGCAGTTGATATATTATAGCGAGGCTGCGCCTTTATTACTGCGTTTACTTTCAACTGCACCT TTTGATATAAGAAAGGAAGTAGCATACGTTTTGGGTAATCTCTGTGTTGCCCCAACAGAAGGTGATGGAAAGCCAAATTTAATCTCAGAGCACCTGGTTT CCCTTGTTGGTAGAGGATGCCTTCCTGGTTTTATTGACTTGGTTAGATCTGCCGACACTGAGGCTGCAAGACTAGGTCTTCAATTTATGGAGCTGGTCTT GAGGGGGATGCCAAATGGCGAGGGCCCGAAGCTCGTTGAGCGAGAGGATGGTATTGATGCCATGGAAAGATTTCAGTTTCACGAGAATGAAGACCTGAGA AATTTGGCAAATGCTTTAGTTGATAGATACTTTGGCGAGGACTATGGGCTTGACGAGGAGGCTGAGTGA
AA sequence Show only first row Show all	>Potri.016G086600.1 pacid=42810193 polypeptide=Potri.016G086600.1.p locus=Potri.016G086600 ID=Potri.016G086600.1.v4.1 annot-version=v4.1 MAEDGLNPHRRDPIKSSVGNVAAHRRRQNAVAVGKERRESLVRAKRLCRVGPSCDDSDISIENDMIIDEEQSILEAQTSSAVEELKSAVSFQGKGAMQKL VGALREMRRLLSKSEFPPVEAAIKAGAIPLLVQCLSFGSPDEQLLEAAWCLTNIAAGKPEETKALLPALPLLIAHLGEKSSLPVAEQCAWALGNVAGEGE ELRSVLLCQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDHKAATELIRVDGVLDAILRHLRKADEELATEVAWVVVYLSALSNVATSMLVKSDALQL LVQRLASSNSLQLLIPVLRSLGNVIAGDSHTIVAVLLPGCEITDNVIEVLVKCLKSEHRVLKKEAAWVLSNIAAGSIEHKQLIYYSEAAPLLLRLLSTAP FDIRKEVAYVLGNLCVAPTEGDGKPNLISEHLVSLVGRGCLPGFIDLVRSADTEAARLGLQFMELVLRGMPNGEGPKLVEREDGIDAMERFQFHENEDLR NLANALVDRYFGEDYGLDEEAE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03070		IMPA-9	importin alpha isoform 9 (.1)		Potri.016G086600 [exp]	0	1
AT5G65110		ATACX2, ACX2	acyl-CoA oxidase 2 (.1.2)		Potri.005G077600 [exp]	6.92	0.7016
AT2G37840			Protein kinase superfamily pro...		Potri.006G092900 [exp]	7.81	0.7453
AT3G18860			transducin family protein / WD...		Potri.009G112184 [exp]	10.67	0.7305
AT3G47610			transcription regulators;zinc ...		Potri.012G068900 [exp]	18.76	0.6830
AT4G30110		ATHMA2, HMA2	ARABIDOPSIS HEAVY METAL ATPASE...		Potri.006G076900 [exp]	19.97	0.6840
AT4G34280			transducin family protein / WD...		Potri.009G092500 [exp]	42.60	0.6350
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Potri.011G152500 [exp]	42.84	0.6542
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Potri.009G063800 [exp]	45.60	0.6786
AT1G12580		PEPKR1	phosphoenolpyruvate carboxylas...		Potri.003G120800 [exp]	52.76	0.6764
AT5G03080			Phosphatidic acid phosphatase ...		Potri.016G086700 [exp]	53.66	0.6460

Compare expression of checked genes

Potri.016G086600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.