Plant FIBer expression Database

Potri.016G086700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G03080 298 / 3e-103 Phosphatidic acid phosphatase (PAP2) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G130700
[exp]
361 / 2e-128 AT5G03080 313 / 2e-109 Phosphatidic acid phosphatase (PAP2) family protein (.1)
Potri.005G120400
[exp]
47 / 5e-06 AT5G66450 219 / 9e-71 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2)
Potri.007G021600
[exp]
45 / 1e-05 AT5G66450 240 / 1e-78 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026489
[exp]
309 / 1e-107 AT5G03080 327 / 1e-114 Phosphatidic acid phosphatase (PAP2) family protein (.1)
Lus10019919
[exp]
236 / 3e-79 AT5G03080 238 / 2e-80 Phosphatidic acid phosphatase (PAP2) family protein (.1)
Lus10028327
[exp]
56 / 6e-09 AT3G50920 156 / 2e-46 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2)
Lus10028326
[exp]
46 / 8e-06 AT5G66450 160 / 2e-48 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2)
Lus10041773
[exp]
44 / 3e-05 AT3G50920 101 / 7e-30 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2)
Lus10041774
[exp]
44 / 5e-05 AT5G66450 229 / 3e-75 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2)
Lus10028328
[exp]
43 / 7e-05 AT5G66450 232 / 2e-76 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0525 pap2 PF01569 PAP2 PAP2 superfamily
Representative CDS sequence
>Potri.016G086700.2 pacid=42809147 polypeptide=Potri.016G086700.2.p locus=Potri.016G086700 ID=Potri.016G086700.2.v4.1 annot-version=v4.1
ATGTCTAATACGCCACTAAAAGCCGTGACCCTCACTCTCGTTCGCTACCAAAAAGGAGACCAAATAGGCCATTTCTTAGCATGGGTATCACTGATCCCTG
TCTTCATAAGTCTAGGCGGTTTCCTCACTCACTTCATATTCCGTCGTGAACTCCATGGCATGTTTTTCGCTCTTGGTCTTCTTATTTCTCAATTCATCAA
CGGAATCATTAAAACATTCGTCAAACAAGCGCGACCTGAAACATGTGCTCTTCTTGACATGTGTGATTCTCTTGGCTGGCCTTCTAGCCATTCGCAGTAC
ATGTTCTTTTTCGCTGTTTATTTCACTTTGTTGACCCTTGATGGAATTGGGTTTTCGGAGATTAAGAATAATTGGGCTGTTAATTTTTTTCCGTGGTCAT
TAGCTGTGTTGACCATGTATTCTAGGGTTTATTTAGGGTATCATACGTTCGCCCAGGTTTTTGCTGGGGCTGTTTTAGGGTTTTTTCTTGGGGCCGGGTG
GTATTGGGTCGTGACTAATGTGATTTCTGAGTATTTTCCGATGATTGAGGAGAGTATGTTTGGAAGGATGTTTTATGTGAAGGATAGTTCCCATATTAGG
AATGTTTTGAAGTTTGAGTATGAAAATGCAAGAGCTGCTAGAAAGAATATGGATGCCAAAGCTGATTGA
AA sequence
>Potri.016G086700.2 pacid=42809147 polypeptide=Potri.016G086700.2.p locus=Potri.016G086700 ID=Potri.016G086700.2.v4.1 annot-version=v4.1
MSNTPLKAVTLTLVRYQKGDQIGHFLAWVSLIPVFISLGGFLTHFIFRRELHGMFFALGLLISQFINGIIKTFVKQARPETCALLDMCDSLGWPSSHSQY
MFFFAVYFTLLTLDGIGFSEIKNNWAVNFFPWSLAVLTMYSRVYLGYHTFAQVFAGAVLGFFLGAGWYWVVTNVISEYFPMIEESMFGRMFYVKDSSHIR
NVLKFEYENARAARKNMDAKAD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G03080 Phosphatidic acid phosphatase ... Potri.016G086700
[exp]
0 1
AT4G02980 ABP1 endoplasmic reticulum auxin bi... Potri.002G212400
[exp]
3.87 0.7826
AT3G28970 AAR3 antiauxin-resistant 3, Domain ... Potri.004G122100
[exp]
7.74 0.7734
AT5G18200 UTP:galactose-1-phosphate urid... Potri.006G233200
[exp]
11.83 0.7481
AT4G10570 UBP9 ubiquitin-specific protease 9 ... Potri.011G152500
[exp]
13.41 0.7378
AT2G20280 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Potri.016G084100
[exp]
17.17 0.7597
AT5G49220 Protein of unknown function (D... Potri.008G213300
[exp]
19.59 0.7615
AT1G32460 unknown protein Potri.003G089100
[exp]
21.63 0.6985
AT4G09830 Uncharacterised conserved prot... Potri.005G196400
[exp]
22.27 0.7609
AT5G35080 unknown protein Potri.006G061600
[exp]
28.26 0.6878
AT3G03750 SUVR3, SDG20 SET domain protein 20 (.1.2) Potri.013G064600
[exp]
30.75 0.7333 SDG935

Potri.016G086700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.