Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37110 309 / 3e-107 PLAC8 family protein (.1) AT2G40935 68 / 9e-14 PLAC8 family protein (.1.2.3) AT3G18450 61 / 2e-11 PLAC8 family protein (.1) AT3G18470 58 / 9e-11 PLAC8 family protein (.1) AT3G18460 55 / 4e-09 PLAC8 family protein (.1) AT1G68630 54 / 9e-09 PLAC8 family protein (.1) AT2G45010 40 / 0.0005 PLAC8 family protein (.1.2) AT1G49030 40 / 0.0007 PLAC8 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G130300 [exp] 365 / 2e-129 AT2G37110 320 / 1e-111 PLAC8 family protein (.1) Potri.006G024900 [exp] 67 / 2e-13 AT2G40935 261 / 6e-90 PLAC8 family protein (.1.2.3) Potri.003G108800 [exp] 48 / 1e-06 AT5G51400 339 / 4e-119 PLAC8 family protein (.1) Potri.008G132775 [exp] 46 / 4e-06 AT1G14870 185 / 2e-60 PLANT CADMIUM RESISTANCE 2 (.1) Potri.001G124500 [exp] 45 / 1e-05 AT5G51400 330 / 1e-115 PLAC8 family protein (.1) Potri.002G141600 [exp] 45 / 2e-05 AT2G45010 303 / 6e-105 PLAC8 family protein (.1.2) Potri.010G108900 [exp] 42 / 0.0001 AT1G14870 142 / 4e-43 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G127700 [exp] 42 / 0.0001 AT1G68610 174 / 5e-56 PLANT CADMIUM RESISTANCE 11 (.1) Potri.007G042800 [exp] 41 / 0.0003 AT1G14870 152 / 7e-48 PLANT CADMIUM RESISTANCE 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015072 [exp] 310 / 2e-107 AT2G37110 306 / 4e-106 PLAC8 family protein (.1) Lus10023176 [exp] 307 / 4e-106 AT2G37110 299 / 7e-103 PLAC8 family protein (.1) Lus10019922 [exp] 300 / 3e-103 AT2G37110 303 / 3e-104 PLAC8 family protein (.1) Lus10026492 [exp] 277 / 2e-94 AT2G37110 290 / 3e-99 PLAC8 family protein (.1) Lus10005257 [exp] 68 / 7e-14 AT2G40935 228 / 6e-77 PLAC8 family protein (.1.2.3) Lus10031733 [exp] 48 / 1e-06 AT2G45010 313 / 3e-109 PLAC8 family protein (.1.2) Lus10027214 [exp] 47 / 3e-06 AT2G45010 336 / 1e-117 PLAC8 family protein (.1.2) Lus10038926 [exp] 47 / 4e-06 AT2G45010 342 / 4e-118 PLAC8 family protein (.1.2) Lus10028184 [exp] 45 / 2e-05 AT2G45010 319 / 2e-111 PLAC8 family protein (.1.2) Lus10004063 [exp] 43 / 3e-05 AT1G68630 132 / 2e-40 PLAC8 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04749 [poplar] [flax] PLAC8 PLAC8 family
Representative CDS sequence Show only first row Show all	>Potri.016G087200.1 pacid=42810363 polypeptide=Potri.016G087200.1.p locus=Potri.016G087200 ID=Potri.016G087200.1.v4.1 annot-version=v4.1 ATGACGGACAACAACAACAACCCAAGCTTCAACAGCTATAATAATGATGGAGAGGAATCAAGCCCGTTGTTGAAGAAGAACCTTGAAGACAACGACAAGA AACCCGCCAAGGTTTCTGCTGATGCGAAGACCGCCACCGCTGAATATGGATGTACCGTCAATGGGCTTCCGTTGATTCATGGCAGCGTGATGGGTGAGCC TATGGGACGGACTCAGTGGGACTCCTGCCTTTTCTGTTGCCTCGGTCGCAACGATGAATTCTGTAGCAGCGATCTTGAAGTCTGTCTTCTTGGAAGCATT GCCCCTTGCGTGCTGTATGGAAGCAATGCTGAGAGACTTGGATCTACTCCTGGAACATTTGCATCCCACTGCTTGTCATACTATGGTTTGTACCTGATTG GCAGCTCATTTTTGGGTGGGAATTGCCTTGCACCATGGTTTTCATATCCTAGCCGGACAGCTATCCGCCGGAAGTTTAACCTAGAGGGTAGCTGTGAGGC ACTTAATAGGTCATGTGGTTGCTGTGGAAGCTTTGTGGAAGATGGTCTGCAACGTGAGCAGTGTGAATCAGCATGTGATTTTGCAACTCATTTTTTCTGC CACACATGTGCTCTTTGCCAGGAAGCTCGCGAGATTCGTCGTAGGGTACTCCATCCTGGTTTCAATGCTCAACCAGTCTTGGTTATGATCCCTCCTGGGG AGCAATCCATGGGACGTGGGGCTTGA
AA sequence Show only first row Show all	>Potri.016G087200.1 pacid=42810363 polypeptide=Potri.016G087200.1.p locus=Potri.016G087200 ID=Potri.016G087200.1.v4.1 annot-version=v4.1 MTDNNNNPSFNSYNNDGEESSPLLKKNLEDNDKKPAKVSADAKTATAEYGCTVNGLPLIHGSVMGEPMGRTQWDSCLFCCLGRNDEFCSSDLEVCLLGSI APCVLYGSNAERLGSTPGTFASHCLSYYGLYLIGSSFLGGNCLAPWFSYPSRTAIRRKFNLEGSCEALNRSCGCCGSFVEDGLQREQCESACDFATHFFC HTCALCQEAREIRRRVLHPGFNAQPVLVMIPPGEQSMGRGA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37110			PLAC8 family protein (.1)		Potri.016G087200 [exp]	0	1
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Potri.019G127500 [exp]	2.64	0.6932	Pt-CIPK2.1
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Potri.009G121300 [exp]	15.74	0.6503	Pt-RD19.2
AT1G80160		GLYI7	glyoxylase I 7, Lactoylglutath...		Potri.003G062400 [exp]	20.19	0.7105
AT3G22200		HER1, GABA-T, P...	POLLEN-PISTIL INCOMPATIBILITY ...		Potri.016G018500 [exp]	35.29	0.6051
AT1G53910	AP2_ERF	RAP2.12	related to AP2 12 (.1.2.3)		Potri.001G163700 [exp]	35.49	0.6352	Pt-ERF1.3
AT1G66200		ATGSR2, GLN1;2	glutamine synthetase 1;2, glut...		Potri.005G093200 [exp]	38.57	0.6948	NCPGS.4
AT1G55265			Protein of unknown function, D...		Potri.001G008240 [exp]	43.30	0.5944
AT2G31570		ATGPX2	glutathione peroxidase 2 (.1)		Potri.007G126600 [exp]	76.92	0.6012
AT3G06240			F-box family protein (.1)		Potri.017G058000 [exp]	100.31	0.6406
AT1G16180			Serinc-domain containing serin...		Potri.003G186500 [exp]	104.61	0.5757

Compare expression of checked genes

Potri.016G087200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.