Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53380 881 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G03140 783 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 560 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 375 / 3e-120 Concanavalin A-like lectin protein kinase family protein (.1) AT5G10530 316 / 5e-98 Concanavalin A-like lectin protein kinase family protein (.1) AT5G59260 313 / 8e-97 Concanavalin A-like lectin protein kinase family protein (.1) AT5G01550 312 / 3e-96 LECRKA4.2 lectin receptor kinase a4.1 (.1) AT5G06740 305 / 8e-94 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 303 / 7e-93 RLK receptor lectin kinase (.1) AT3G53810 299 / 3e-91 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G130000 [exp] 1138 / 0 AT3G53380 866 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G368300 [exp] 559 / 0 AT5G55830 853 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.011G093700 [exp] 550 / 0 AT5G55830 849 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G455500 [exp] 338 / 4e-106 AT5G06740 416 / 1e-136 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283700 [exp] 334 / 3e-104 AT5G10530 497 / 7e-168 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283212 [exp] 329 / 2e-102 AT5G10530 385 / 3e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283204 [exp] 327 / 3e-102 AT5G10530 472 / 3e-159 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283400 [exp] 328 / 4e-102 AT5G10530 494 / 6e-167 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283200 [exp] 325 / 6e-102 AT5G10530 382 / 8e-125 Concanavalin A-like lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019923 [exp] 942 / 0 AT3G53380 927 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10026493 [exp] 883 / 0 AT3G53380 872 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016620 [exp] 551 / 1e-174 AT5G55830 826 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001562 [exp] 351 / 5e-111 AT3G53810 655 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10022662 [exp] 335 / 1e-104 AT5G01550 651 / 0.0 lectin receptor kinase a4.1 (.1) Lus10028699 [exp] 329 / 4e-102 AT5G06740 455 / 1e-151 Concanavalin A-like lectin protein kinase family protein (.1) Lus10009423 [exp] 329 / 9e-102 AT5G06740 446 / 2e-147 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007075 [exp] 317 / 1e-101 AT5G10530 397 / 1e-133 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004277 [exp] 325 / 2e-101 AT5G10530 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004279 [exp] 308 / 2e-94 AT5G10530 578 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0004 [poplar] [flax] Concanavalin PF00139 [poplar] [flax] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Potri.016G087800.1 pacid=42810511 polypeptide=Potri.016G087800.1.p locus=Potri.016G087800 ID=Potri.016G087800.1.v4.1 annot-version=v4.1 ATGTCTCTCTCTTGCAAAACTTCGGACATTGGTACTTTACCCCTTCCTCTGTTTCTCCTCCTCTGTTTAGTACTGTTAACAACCAAAGCAACATCGACTG ATTTTGACTTCGGTACTTTAACACTTAGCAGTCTTAAGCTCCTCGGCGACGCTCACTTAAACAATGGCAACGTCCGTCTCACTCGTGACCTCGACGTCCC CAATTCTGGCGCCGGCAAAGTTCTCTACTCTAAACCCATCAGATTCCGGCAGCCCTCCACTCACGCCATCACCAGCTTCTCCACTTTCTTCTCCTTTTCT GTTGCTAATCTGAACCCTTCCTCCATCGGCGGTGGCCTAGCTTTTGTCCTCTCGCCTGACTCCGATACCCTCGGTGCTGCCGGCGGCTTCCTTGGACTCC TCAACACCAACGACATGCCAAAGGCTGCTTCCAGTTTTGTGGCGGTCGAGTTTGATACTTTAATGGACGTGGAGTTTAAAGACATTAATGGGAACCATGT GGGTTTGGATCTAAGTAGTATGGTTTCTACACAAATTGGTGATTTAGGAGCTATTAATATTGATTTAAAAAGTGGTGATCTTGTTAATGCTTGGATCGAT TATGATGGTACAAACCTAAGCTTTAACATTTCTGTTTCATATTCAAATCTTAAGCCCAAAGAACCAATCTTGTCTTTTAATCTTGACTTGGACCAGTATG TTAATGATTTTATGTATGTTGGGTTTTCTGGGTCTACTCAAGGAAGTACAGAGGTTCATAGTATTGAGTGGTGGAGTTTCAGTTCATCTTTTCAGTTAAG TTCAGGTTCTGAGTCATCTTCTCCTGTACCTCCACCTCCAACGGCTAGTTTGATGAATCCAACGGCCAATTCTGTTAAGTCCCCGCCACCAACTTTGGCT CCTAGTGGTTTAGAGTCAGTTGGTGGTAAGAGTGCTAAGTCTGATTCGTGTCATAATCAGCTCTGCAAGCAGGGTGCAGGGGCTGTTGCAGGGGTGGTGA CTGCTAGTGCTTTTTTTGTTATCTTCGCCGGTGTTCTTATCTGGGTTTTCTCTAAAAGGTCCAAGCGTGTAAAAGAGTCAGAGTCTTTTGCATCAGAGGT TATCAAAATGCCTAAGGAGTTTAGCTACAGAGAGCTTAAATCAGCTACTAAATGCTTTAATGCGAATAGAATTATTGGTCATGGAGCATTTGGTATTGTT TATAAGGGTATATTGCCGGAGACTGGTGACATTGTGGCGGTGAAGCGGTGTAGTCATAACAGTCAAGGAAAGAATGAGTTTTTATCTGAATTGTCGATAA TTGGGACTCTAAGGCATCGAAATCTTGTTCGGCTTCAAGGTTGGTGCCATGAAAAAGGTGAAATTTTGCTTGTTTATGACTTGATGCCCAATGGGAGTCT TGATAAAGCTTTGTTCGAGGCAAGAACGCCTTTGCCATGGCCACATAGGCGTAAAGTCTTACTTGGTGTTGCTTCTGCTCTAGCTTATTTGCATCAAGAA TGTGAAAACCAGGTGATTCATAGAGATATTAAGACCAGCAATATTATGCTGGATGAGGGGTTCAATGCAAGATTAGGAGATTTTGGATTGGCCAGGCAAA TTGAGCATGATAAATCGCCAGATGCAACAGTAGCTGCTGGTACAATGGGGTATTTAGCTCCCGAGTATCTATTAACAGGGAGAGCAACGGAGAAAACCGA TGTATTTAGTTATGGAGCTGTGGTTCTTGAAGTGGCTAGTGGGAGAAGACCCATCGAAAAAGAGACCAGTGGGGTTGGGAAAGTTACGCTTAATGGGAAT TTGGTTGAATGGGTTTGGAATTTACACAGAGAAGGCAGATTGCTAGCGGCAGCTGATGATAGGCTTGAGGGTCAATTTGATGAGAGCGAGATGAGGAGGG TTTTGCTGGTTGGGTTAGCTTGTTCGCACCCTGACCCAATGGCTAGACCCACTATGAGGGGTGTGGTCCAGATGCTCGTGGGGGAAGCTGAGGTCCCTCT TGTCCCAAGAGCAAAACCTACGATGAGTTTTAGCACTTCACATCTCTTGTTGAGCTTGCAAGATAGTGTGTCTGACTGTAACGGTATGATCACCATTTGC ACTTCCTCGTCAGAAAACAGCTTCATAGGTGGTGGTCATGACCTTGTCTGA
AA sequence Show only first row Show all	>Potri.016G087800.1 pacid=42810511 polypeptide=Potri.016G087800.1.p locus=Potri.016G087800 ID=Potri.016G087800.1.v4.1 annot-version=v4.1 MSLSCKTSDIGTLPLPLFLLLCLVLLTTKATSTDFDFGTLTLSSLKLLGDAHLNNGNVRLTRDLDVPNSGAGKVLYSKPIRFRQPSTHAITSFSTFFSFS VANLNPSSIGGGLAFVLSPDSDTLGAAGGFLGLLNTNDMPKAASSFVAVEFDTLMDVEFKDINGNHVGLDLSSMVSTQIGDLGAINIDLKSGDLVNAWID YDGTNLSFNISVSYSNLKPKEPILSFNLDLDQYVNDFMYVGFSGSTQGSTEVHSIEWWSFSSSFQLSSGSESSSPVPPPPTASLMNPTANSVKSPPPTLA PSGLESVGGKSAKSDSCHNQLCKQGAGAVAGVVTASAFFVIFAGVLIWVFSKRSKRVKESESFASEVIKMPKEFSYRELKSATKCFNANRIIGHGAFGIV YKGILPETGDIVAVKRCSHNSQGKNEFLSELSIIGTLRHRNLVRLQGWCHEKGEILLVYDLMPNGSLDKALFEARTPLPWPHRRKVLLGVASALAYLHQE CENQVIHRDIKTSNIMLDEGFNARLGDFGLARQIEHDKSPDATVAAGTMGYLAPEYLLTGRATEKTDVFSYGAVVLEVASGRRPIEKETSGVGKVTLNGN LVEWVWNLHREGRLLAAADDRLEGQFDESEMRRVLLVGLACSHPDPMARPTMRGVVQMLVGEAEVPLVPRAKPTMSFSTSHLLLSLQDSVSDCNGMITIC TSSSENSFIGGGHDLV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53380			Concanavalin A-like lectin pro...		Potri.016G087800 [exp]	0	1
AT3G21690			MATE efflux family protein (.1...		Potri.011G002700 [exp]	1.00	0.8969
AT5G51750		ATSBT1.3	subtilase 1.3 (.1)		Potri.012G131500 [exp]	8.77	0.7970
AT2G24230			Leucine-rich repeat protein ki...		Potri.006G185100 [exp]	9.16	0.8152
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Potri.008G190000 [exp]	10.09	0.8459
AT1G63430			Leucine-rich repeat protein ki...		Potri.001G106600 [exp]	10.58	0.8433
AT5G08350			GRAM domain-containing protein...		Potri.005G088700 [exp]	12.64	0.8261
AT3G17240		mtLPD2, LPD2	lipoamide dehydrogenase 2 (.1....		Potri.010G151400 [exp]	16.24	0.8473	LPD2
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.015G003100 [exp]	16.43	0.8246	COMT1,Pt-OMT1.2
AT5G64310		ATAGP1, AGP1	arabinogalactan protein 1 (.1)		Potri.017G050300 [exp]	19.28	0.8309
AT1G18700			DNAJ heat shock N-terminal dom...		Potri.017G112200 [exp]	20.49	0.8234

Compare expression of checked genes

Potri.016G087800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.