Plant FIBer expression Database

Potri.016G087900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G57610 806 / 0 ADSS, ATPURA adenylosuccinate synthase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026310
[exp]
799 / 0 AT3G57610 812 / 0.0 adenylosuccinate synthase (.1)
Lus10042358
[exp]
799 / 0 AT3G57610 818 / 0.0 adenylosuccinate synthase (.1)
Lus10040512
[exp]
795 / 0 AT3G57610 804 / 0.0 adenylosuccinate synthase (.1)
Lus10011317
[exp]
791 / 0 AT3G57610 806 / 0.0 adenylosuccinate synthase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF00709 Adenylsucc_synt Adenylosuccinate synthetase
Representative CDS sequence
>Potri.016G087900.1 pacid=42808961 polypeptide=Potri.016G087900.1.p locus=Potri.016G087900 ID=Potri.016G087900.1.v4.1 annot-version=v4.1
ATGAACCTCTCCTCTCTCCGCCTTGAATCCAACCCTAGGTGGTCCTACCATGCCGCCCACTTCCCGGCCCACCACGGGCTCAACCCCAGTTTCCGAAGAA
ACTTCGTATCATGCTCGTCCATCAAACCCTCTGCCTCTTCCTCCTTAAGTGTTGCCGAGTCATTCACTAGAGACTCAGCTAGTCGAATTGAATCATTGAG
TCAAGTTTCCGGCGTCTTAGGCTCCCAATGGGGTGATGAAGGCAAAGGCAAACTGGTCGACATCTTGGCCGAACATTTCGACATAGTTGCTCGCTGCCAG
GGCGGTGCGAATGCCGGTCACACTATTTATAATTCAGAAGGAAAGAAATTTGCATTACACCTTGTTCCTTCTGGAATTCTTAACGAGGATACTCTTTGTG
TAATTGGGAATGGGGTTGTTGTCCATTTGCCAGGTTTGTTTAAGGAAATTGATGGGTTAGAAGCTAATGGGGTTTCTTGTACGGGTAGAATATTAGTGTC
TGATCGTGCACATCTGTTGTTTGATTTTCATCAAGAAGTAGATGGGCTTAGAGAAGCTGAGCTAGCGAAATCTTTTATTGGGACTACTAGGAGAGGGATT
GGACCATGCTATTCGAGTAAGGTGATTAGGAATGGGATTAGAGTATGTGATTTGAGGCATATGGATACTTTTCCGCAAAAGCTTGATGCTCTGTTATCAG
ATGTTGCTTCGAGATTTGAGAGTTTTAAATATGGTCCTGAAATGCTTAAGGAAGAAGTTGAGAGGTATAAGAGGTTTGCTGAAAGGTTGGAGCCGTTCAT
TACTGATACAGTACATTTTATGAACGAGTCCATTGCAAAGAAGAAGAAAATTTTGGTTGAAGGTGGTCAAGCTACCATGTTAGATATTGATTTTGGAACT
TACCCTTTCGTGACTTCCTCGAGCCCATCAGCTGGTGGGATCTGTACTGGTCTTGGCATTGCCCCCCGAGTTGTTGGTGATCTCATTGGAGTGGTAAAAG
CTTACACTTCAAGGGTTGGTTCTGGTCCCTTTCCTACTGAGATATTGGGTCAAGGTGGTGACCTCCTAAGGTTTGCTGGGCAGGAGTTTGGAACAACTAC
TGGTCGACCTCGTCGTTGTGGTTGGCTTGATGTAGTTGCGTTGAAGTATGTTTGTCAGATTAACGGCTTTTCTTCTCTGAACCTCACCAAACTCGACGTG
TTGTCAGAATTCTCTGAAATCCAGATAGGTGTTTCTTATAAACAAATTGATGGTACACCAGTGGAATCATTTCCAGGAGATCTCTGTCTCCTTGAACAAT
TAAAGGTGGATTATGAAGTCTTACCTGGATGGAAGAGTGATATTTCTTCCATCAGAAAGTATGCGGACCTTCCAAAGGCTGCACAGCAATACGTGGAGAG
GATAGAGGAGCTTGTTGGTGTACCTATTCATTACATTGGTATTGGGCCGGGACGTGATGCTCTCATATACAAATAA
AA sequence
>Potri.016G087900.1 pacid=42808961 polypeptide=Potri.016G087900.1.p locus=Potri.016G087900 ID=Potri.016G087900.1.v4.1 annot-version=v4.1
MNLSSLRLESNPRWSYHAAHFPAHHGLNPSFRRNFVSCSSIKPSASSSLSVAESFTRDSASRIESLSQVSGVLGSQWGDEGKGKLVDILAEHFDIVARCQ
GGANAGHTIYNSEGKKFALHLVPSGILNEDTLCVIGNGVVVHLPGLFKEIDGLEANGVSCTGRILVSDRAHLLFDFHQEVDGLREAELAKSFIGTTRRGI
GPCYSSKVIRNGIRVCDLRHMDTFPQKLDALLSDVASRFESFKYGPEMLKEEVERYKRFAERLEPFITDTVHFMNESIAKKKKILVEGGQATMLDIDFGT
YPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTSRVGSGPFPTEILGQGGDLLRFAGQEFGTTTGRPRRCGWLDVVALKYVCQINGFSSLNLTKLDV
LSEFSEIQIGVSYKQIDGTPVESFPGDLCLLEQLKVDYEVLPGWKSDISSIRKYADLPKAAQQYVERIEELVGVPIHYIGIGPGRDALIYK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G57610 ADSS, ATPURA adenylosuccinate synthase (.1) Potri.016G087900
[exp]
0 1
AT5G46160 Ribosomal protein L14p/L23e fa... Potri.010G022800
[exp]
2.00 0.8233 RPL14.1
AT5G54880 DTW domain-containing protein ... Potri.001G423900
[exp]
2.64 0.7940
AT3G25545 unknown protein Potri.010G134600
[exp]
3.87 0.8027
AT3G55620 eIF6A, EMB1624 embryo defective 1624, eukaryo... Potri.010G229800
[exp]
4.00 0.7863
AT1G27390 TOM20-2 translocase outer membrane 20-... Potri.001G054900
[exp]
4.47 0.8156 Pt-TOM20.1
AT4G26300 EMB1027 embryo defective 1027, Arginyl... Potri.002G198500
[exp]
4.47 0.8015
AT1G31500 DNAse I-like superfamily prote... Potri.003G106000
[exp]
4.47 0.7801
AT3G49470 NACA2 nascent polypeptide-associated... Potri.015G003300
[exp]
4.89 0.7953
AT1G08220 unknown protein Potri.009G002000
[exp]
9.89 0.7703
AT1G61620 phosphoinositide binding (.1) Potri.011G040000
[exp]
10.95 0.7476

Potri.016G087900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.