Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61560 576 / 0 ATMLO6, MLO6 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4) AT2G39200 573 / 0 ATMLO12, MLO12 MILDEW RESISTANCE LOCUS O 12, Seven transmembrane MLO family protein (.1) AT1G11310 562 / 0 PMR2, ATMLO2, MLO2 POWDERY MILDEW RESISTANT 2, MILDEW RESISTANCE LOCUS O 2, Seven transmembrane MLO family protein (.1.2) AT2G33670 396 / 6e-134 ATMLO5, MLO5 MILDEW RESISTANCE LOCUS O 5, Seven transmembrane MLO family protein (.1) AT1G42560 386 / 1e-130 MLO9, ATMLO9 ARABIDOPSIS THALIANA MILDEW RESISTANCE LOCUS O 9, Seven transmembrane MLO family protein (.1) AT3G45290 386 / 7e-130 ATMLO3, MLO3 MILDEW RESISTANCE LOCUS O 3, Seven transmembrane MLO family protein (.1) AT2G17430 382 / 5e-128 NTA, ATMLO7, MLO7 NORTIA, MILDEW RESISTANCE LOCUS O 7, Seven transmembrane MLO family protein (.1) AT5G65970 379 / 4e-126 ATMLO10, MLO10 MILDEW RESISTANCE LOCUS O 10, Seven transmembrane MLO family protein (.1) AT2G17480 379 / 6e-126 ATMLO8, MLO8 MILDEW RESISTANCE LOCUS O 8, Seven transmembrane MLO family protein (.1) AT2G44110 316 / 8e-103 ATMLO15, MLO15 MILDEW RESISTANCE LOCUS O 15, Seven transmembrane MLO family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G011900 [exp] 654 / 0 AT1G61560 603 / 0.0 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4) Potri.008G041400 [exp] 584 / 0 AT1G61560 768 / 0.0 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4) Potri.010G220500 [exp] 557 / 0 AT1G61560 743 / 0.0 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4) Potri.007G064200 [exp] 475 / 4e-164 AT2G39200 502 / 4e-173 MILDEW RESISTANCE LOCUS O 12, Seven transmembrane MLO family protein (.1) Potri.004G050000 [exp] 436 / 2e-150 AT2G39200 490 / 4e-170 MILDEW RESISTANCE LOCUS O 12, Seven transmembrane MLO family protein (.1) Potri.005G099200 [exp] 422 / 3e-143 AT2G17480 624 / 0.0 MILDEW RESISTANCE LOCUS O 8, Seven transmembrane MLO family protein (.1) Potri.007G064300 [exp] 411 / 7e-139 AT2G17480 669 / 0.0 MILDEW RESISTANCE LOCUS O 8, Seven transmembrane MLO family protein (.1) Potri.011G059200 [exp] 408 / 2e-138 AT2G39200 424 / 2e-143 MILDEW RESISTANCE LOCUS O 12, Seven transmembrane MLO family protein (.1) Potri.011G058900 [exp] 406 / 1e-137 AT1G61560 445 / 2e-151 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041410 [exp] 585 / 0 AT1G61560 769 / 0.0 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4) Lus10036519 [exp] 584 / 0 AT1G61560 763 / 0.0 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4) Lus10040388 [exp] 564 / 0 AT2G39200 735 / 0.0 MILDEW RESISTANCE LOCUS O 12, Seven transmembrane MLO family protein (.1) Lus10023506 [exp] 561 / 0 AT2G39200 731 / 0.0 MILDEW RESISTANCE LOCUS O 12, Seven transmembrane MLO family protein (.1) Lus10036120 [exp] 508 / 5e-177 AT1G61560 599 / 0.0 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4) Lus10030729 [exp] 409 / 1e-138 AT2G33670 628 / 0.0 MILDEW RESISTANCE LOCUS O 5, Seven transmembrane MLO family protein (.1) Lus10036121 [exp] 407 / 1e-137 AT3G45290 542 / 0.0 MILDEW RESISTANCE LOCUS O 3, Seven transmembrane MLO family protein (.1) Lus10019630 [exp] 406 / 2e-136 AT2G17480 711 / 0.0 MILDEW RESISTANCE LOCUS O 8, Seven transmembrane MLO family protein (.1) Lus10022096 [exp] 386 / 2e-128 AT2G17480 687 / 0.0 MILDEW RESISTANCE LOCUS O 8, Seven transmembrane MLO family protein (.1) Lus10015328 [exp] 376 / 6e-126 AT1G11310 432 / 2e-146 POWDERY MILDEW RESISTANT 2, MILDEW RESISTANCE LOCUS O 2, Seven transmembrane MLO family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03094 [poplar] [flax] Mlo Mlo family
Representative CDS sequence Show only first row Show all	>Potri.016G088000.2 pacid=42810394 polypeptide=Potri.016G088000.2.p locus=Potri.016G088000 ID=Potri.016G088000.2.v4.1 annot-version=v4.1 ATGGCGGAGGCTGTAAAAGCTCGATCTCTGGAGGAAACTCCAACATGGGCGGTTGCAGTTGTTTGTTTTGTGATGGTATTGATTTCAATCATTATTGAAC ACATCATTCATTTAATTGGAAAGTGGCTGAAAAAGAGACGCAAACGAGCTCTTTATGAGGCACTTGAAAAGATCAAATCAGAGCTTATGTTATTGGGATT CATGTCATTGCTTCTAACAATAGGACAAGGACCTATTTCAGAAATATGTGTGCCAAAGTCTGTAGGGGCTACCTGGCATCCATGTAAGAAGCAAGAGAAG GATCCGTCAGAGGATGAAAATGGGGGATCTGACAAATGTGCTGAGAAGGGTAAAGTTTCTCTTGTTTCAGCTGACGGCATCACGCAACTTAACATATTCA TCTTTGTGCTAGCGGCTTTCCACGTGCTTTGTTGCATCATCACTCTGACCTTAAGCAGAGCAAAGATGAGGAAATGGAAGAAATGGGAAATAGAGACGAC AACATCTAACTACCAGTTCTCACATGACCCGGTGAGGTTTAGGTTTGCAAGGGAGACATCATTTGGAAGGAGGCATCTGAACTTCTGGGCTCGCTCACCA ATTCTCCTGTGGATAGTCTGTTTCTTCAGACAATTTCTTAGATCAGTTCCAAAGGTGGATTACCTGACCCTACGCCATGGCTTTATCACTGCACATTTGG CACCTCGGAGTCAAACTAAGTTCGATTTCCAGACATACATCAAAAGATCACTTGAGGAGGATTTCAAAGTTGTGGTTGGAATCAGCCCAACCATCTGGTT CTTCGCAGTTCTTTTCCTACTGTTTAATACATATGGCTGGTATTCTTATCTATGGCTCCCTTTCATCCCGCTGATTGTTATCTTATCGGTGAGTACAAAG CTACAGGTTGTTATAACCCAGATGGGCCTAAGGATTCAAGGCACACAGGTGGTGCGGGGTACCCCAGTGGTCCAACCAGGGGACGATCTCTTTTGGTTCA ACCATCCACGCCTACTTCTTTATCTTATAAATTTCGTTCTCTTTCAGAATGCTTTCCAGTTTGCTTTCTTTGCGTGGACTTGGTATGAATTCGGGTTGAA GTCTTGCTTTCACAAGTATCCAGAAGATCTAATTTTGAGGATCACAATGTGGGCAATAGTTCAATTCTTTTGCAGCTATGTGACTCTTCCTTTGTATGCG TTGGTAACTCAGATGGGTACAACCATGCGGCCAACGATCTTCAATGAGCGACTTGCCAAGGCCCTGAGAAATTGGCACCACACTGCTAAACAACACGTTA AACAGAATCGACACTCGGGCACTGTAACACCAGCAACGAGTGCACCAGGCACCCCATCGCATACCATATCCCCTGTTCATCCACTGCATGACTACAGAGG CGAGTCCGGTGGAATACAAGCATCACTAAGGTCTTAA
AA sequence Show only first row Show all	>Potri.016G088000.2 pacid=42810394 polypeptide=Potri.016G088000.2.p locus=Potri.016G088000 ID=Potri.016G088000.2.v4.1 annot-version=v4.1 MAEAVKARSLEETPTWAVAVVCFVMVLISIIIEHIIHLIGKWLKKRRKRALYEALEKIKSELMLLGFMSLLLTIGQGPISEICVPKSVGATWHPCKKQEK DPSEDENGGSDKCAEKGKVSLVSADGITQLNIFIFVLAAFHVLCCIITLTLSRAKMRKWKKWEIETTTSNYQFSHDPVRFRFARETSFGRRHLNFWARSP ILLWIVCFFRQFLRSVPKVDYLTLRHGFITAHLAPRSQTKFDFQTYIKRSLEEDFKVVVGISPTIWFFAVLFLLFNTYGWYSYLWLPFIPLIVILSVSTK LQVVITQMGLRIQGTQVVRGTPVVQPGDDLFWFNHPRLLLYLINFVLFQNAFQFAFFAWTWYEFGLKSCFHKYPEDLILRITMWAIVQFFCSYVTLPLYA LVTQMGTTMRPTIFNERLAKALRNWHHTAKQHVKQNRHSGTVTPATSAPGTPSHTISPVHPLHDYRGESGGIQASLRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Potri.016G088000 [exp]	0	1
AT1G29860	WRKY	ATWRKY71, WRKY7...	WRKY DNA-binding protein 71 (....		Potri.011G079300 [exp]	1.41	0.8544
AT4G27290			S-locus lectin protein kinase ...		Potri.001G414200 [exp]	2.44	0.8467
					Potri.004G037750 [exp]	4.47	0.7984
AT3G59850			Pectin lyase-like superfamily ...		Potri.007G144400 [exp]	7.48	0.8291
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Potri.006G239200 [exp]	8.00	0.7777
AT3G59850			Pectin lyase-like superfamily ...		Potri.017G006200 [exp]	11.22	0.7706
AT2G33770		ATUBC24, UBC24,...	UBIQUITIN-CONJUGATING ENZYME 2...		Potri.004G043500 [exp]	12.64	0.8131
AT5G17680			disease resistance protein (TI...		Potri.019G069500 [exp]	13.03	0.8218
AT1G30220		ATINT2	ARABIDOPSIS THALIANA INOSITOL ...		Potri.004G133340 [exp]	13.67	0.7966
AT2G27430			ARM repeat superfamily protein...		Potri.011G065300 [exp]	13.74	0.8058

Compare expression of checked genes

Potri.016G088000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.