Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03160 570 / 0 ATP58IPK homolog of mamallian P58IPK (.1) AT5G01390 82 / 1e-17 DNAJ heat shock family protein (.1.2.3.4) AT4G28480 82 / 3e-17 DNAJ heat shock family protein (.1.2) AT2G20560 82 / 9e-17 DNAJ heat shock family protein (.1) AT3G08910 81 / 1e-16 DNAJ heat shock family protein (.1) AT1G56300 73 / 3e-15 Chaperone DnaJ-domain superfamily protein (.1) AT2G22360 76 / 1e-14 DNAJ heat shock family protein (.1) AT4G39960 76 / 1e-14 Molecular chaperone Hsp40/DnaJ family protein (.1) AT1G59725 74 / 2e-14 DNAJ heat shock family protein (.1) AT5G25530 74 / 3e-14 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G136700 [exp] 88 / 9e-19 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1) Potri.017G016100 [exp] 86 / 5e-18 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1) Potri.007G135700 [exp] 85 / 1e-17 AT2G20560 416 / 3e-146 DNAJ heat shock family protein (.1) Potri.018G034600 [exp] 83 / 3e-17 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.011G057601 [exp] 82 / 5e-17 AT2G20560 444 / 2e-157 DNAJ heat shock family protein (.1) Potri.005G073900 [exp] 81 / 2e-16 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.006G246700 [exp] 79 / 5e-16 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1) Potri.010G035000 [exp] 78 / 1e-15 AT1G10350 429 / 1e-151 DNAJ heat shock family protein (.1) Potri.008G194000 [exp] 77 / 2e-15 AT1G10350 402 / 4e-141 DNAJ heat shock family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019928 [exp] 616 / 0 AT5G03160 637 / 0.0 homolog of mamallian P58IPK (.1) Lus10015078 [exp] 610 / 0 AT5G03160 638 / 0.0 homolog of mamallian P58IPK (.1) Lus10026498 [exp] 587 / 0 AT5G03160 576 / 0.0 homolog of mamallian P58IPK (.1) Lus10023181 [exp] 503 / 7e-177 AT5G03160 507 / 2e-178 homolog of mamallian P58IPK (.1) Lus10041254 [exp] 83 / 2e-17 AT5G25530 464 / 2e-165 DNAJ heat shock family protein (.1) Lus10017687 [exp] 84 / 3e-17 AT2G20560 551 / 0.0 DNAJ heat shock family protein (.1) Lus10021961 [exp] 83 / 3e-17 AT5G25530 468 / 7e-167 DNAJ heat shock family protein (.1) Lus10013981 [exp] 83 / 4e-17 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1) Lus10015402 [exp] 82 / 1e-16 AT2G20560 483 / 7e-173 DNAJ heat shock family protein (.1) Lus10005033 [exp] 80 / 5e-16 AT3G08910 503 / 0.0 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0020 [poplar] [flax] TPR PF07719 [poplar] [flax] TPR_2 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.016G088600.1 pacid=42809793 polypeptide=Potri.016G088600.1.p locus=Potri.016G088600 ID=Potri.016G088600.1.v4.1 annot-version=v4.1 ATGAATCTGGTTGTGATGATGAGCATGGATGGTGTGGCATGGAGAGGATTCGGATGTACAATCTTTATACTCCATTTTGTTTTTGTTTGTCACTTCTTAC TTCTCCAACCTCTTGTTTCTGCTTCAGATACGGAAGCTGGAAATGCTGCGGAGTTGTTTGAAAGGGCTTCTCAAAGTATAAAACTTAAGCGTTACAGTGA CGCACTTGATGACCTCAATGCTGCAATTGAGGCAGATCCCTCCCTCTCTGAAGCTTATATTCGGCGTGCCTCCATTCTTCGTCAGTTATGCAGATACAAT GAATCTGAAAAGAGCTACAAAAAGTTTCTGGAGCTAAAACCTGGGCATTTGACTGCGGAAAAGGAACTTTCTCAATTGCATCAAGCTCAGAGTGCATTGG ATACTGCTTTGACTCTTTTGGATTCAGGGGATTATGCAAAATCTCTGGAATATGTTGATAAAGTTGTCCTTGTGTTTTCTCCAGCATGCTCGGAGGCCAA ACTCCTCAGAGTAAAGTTGTTGTTAGCTGTTCAAGACTACTCTGCTGTCATCTCCGAGGCTGGGTATATTCTCAAGGAAGATGAAAATAATCTAGAGGCA CTACTGCTCCGTGGCCGTGCGTACTACTATTTAGCAGATCATGATGTTGCTACAAAGCATTACCAAAAGGGTCTCCGTCTTGATCCAGAGCACAGTCAGC TGAAGAAAGCGTATTTTGGGCTGAAAAATTTACTCAAGAAAACTAAAAATGCAGAAGATAATGCAAGTAAGGGTAAACTACGTGTCGCAGTAGAGGATTA CAGAGCAGCACTCGCACTGGACCCTCATCACCTTGCACACAATGTACATCTTCACCTAGGCTTATGTAAGGTCTTGGTTAAGCTTGGCAGGGGCAAGGAT GCTTTAACTAGTTGCAATGAAGCGCTCAACATTGAAGGGGAGCTTCTTGAAGCTTTAGTTCAGAGAGGTGAAGCTAAACTCATAGTAGAGGACTGGGAAG GAGCTGTTGAAGATCTGAAATCAGCAGCTGAAAAATCACCTCAGGATATGAGTATCCGGGAAGCATTGATGAAGGCAGAGAAGGCTTTGAAGATGAGTAA GCGCCGGGATTGGTACAAGATATTAGGAATTTCAAAGACTGCATCCGTATCTGAAATCAAACGTGCATATAAAAAGCTTGCTCTGCAGTGGCATCCGGAT AAGAATGTTGATAATAGAGAAGAAGCAGAGGCCAAGTTCCGAGATATTGCAGCTGCATATGAGGTTCTTGGAGACGATGATAAGCGTGCAAGATATGATA GAGGAGAAGACATGGAAGACATGGGGATGGGTGGAGGTGGCGGTGGCAACCCATTCGGCGGTGGTGGACAGCAATTTTCATTTCATTTTGAGGGAGGCTT TCCTGGTGGTGGATTTGACGGAGGTTTTCCTGGTGGTTATCAATTCCATTTTTGA
AA sequence Show only first row Show all	>Potri.016G088600.1 pacid=42809793 polypeptide=Potri.016G088600.1.p locus=Potri.016G088600 ID=Potri.016G088600.1.v4.1 annot-version=v4.1 MNLVVMMSMDGVAWRGFGCTIFILHFVFVCHFLLLQPLVSASDTEAGNAAELFERASQSIKLKRYSDALDDLNAAIEADPSLSEAYIRRASILRQLCRYN ESEKSYKKFLELKPGHLTAEKELSQLHQAQSALDTALTLLDSGDYAKSLEYVDKVVLVFSPACSEAKLLRVKLLLAVQDYSAVISEAGYILKEDENNLEA LLLRGRAYYYLADHDVATKHYQKGLRLDPEHSQLKKAYFGLKNLLKKTKNAEDNASKGKLRVAVEDYRAALALDPHHLAHNVHLHLGLCKVLVKLGRGKD ALTSCNEALNIEGELLEALVQRGEAKLIVEDWEGAVEDLKSAAEKSPQDMSIREALMKAEKALKMSKRRDWYKILGISKTASVSEIKRAYKKLALQWHPD KNVDNREEAEAKFRDIAAAYEVLGDDDKRARYDRGEDMEDMGMGGGGGGNPFGGGGQQFSFHFEGGFPGGGFDGGFPGGYQFHF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03160		ATP58IPK	homolog of mamallian P58IPK (....		Potri.016G088600 [exp]	0	1
AT5G42020		BIP2, BIP	luminal binding protein, Heat ...		Potri.001G087500 [exp]	1.73	0.9183	Pt-BIP.2
AT5G61790		CNX1, ATCNX1	calnexin 1 (.1)		Potri.015G109200 [exp]	2.00	0.9169	CNX1.1
AT1G14360		ATUTR3, UTR3	UDP-galactose transporter 3 (....		Potri.016G139100 [exp]	2.00	0.8797
AT4G24190		AtHsp90-7, HSP9...	SHEPHERD, HEAT SHOCK PROTEIN 9...		Potri.005G241100 [exp]	3.46	0.8979
AT5G56000		Hsp81.4, AtHsp9...	HEAT SHOCK PROTEIN 90.4, HEAT ...		Potri.001G466000 [exp]	4.24	0.8456
					Potri.001G400401 [exp]	4.89	0.8481
AT5G42020		BIP2, BIP	luminal binding protein, Heat ...		Potri.003G143600 [exp]	5.00	0.8785	BIP.1
AT3G62600		ATERDJ3B	DNAJ heat shock family protein...		Potri.002G198000 [exp]	5.47	0.8645
AT5G61790		CNX1, ATCNX1	calnexin 1 (.1)		Potri.012G111100 [exp]	5.91	0.8497	CNX1.2
AT4G16660			heat shock protein 70 (Hsp 70)...		Potri.006G022100 [exp]	7.07	0.8444

Compare expression of checked genes

Potri.016G088600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.