Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-FLA11.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03170 202 / 3e-65 ATFLA11, FLA11, IRX13 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) AT5G60490 170 / 3e-52 FLA12 FASCICLIN-like arabinogalactan-protein 12 (.1) AT5G44130 128 / 3e-36 FLA13 FASCICLIN-like arabinogalactan protein 13 precursor (.1) AT2G20520 127 / 1e-35 FLA6 FASCICLIN-like arabinogalactan 6 (.1) AT1G03870 124 / 2e-34 FLA9 FASCICLIN-like arabinoogalactan 9 (.1) AT2G04780 70 / 4e-14 FLA7 FASCICLIN-like arabinoogalactan 7 (.1.2) AT3G60900 61 / 2e-10 FLA10 FASCICLIN-like arabinogalactan-protein 10 (.1) AT2G45470 58 / 1e-09 AGP8, FLA8 FASCICLIN-like arabinogalactan protein 8 (.1) AT3G46550 57 / 2e-09 FLA4, SOS5 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G129200 [exp] 347 / 5e-122 AT5G03170 199 / 9e-64 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Potri.015G129400 [exp] 157 / 2e-47 AT5G60490 206 / 2e-66 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.012G127900 [exp] 152 / 1e-45 AT5G60490 207 / 6e-67 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G120600 [exp] 142 / 1e-41 AT5G44130 182 / 3e-57 FASCICLIN-like arabinogalactan protein 13 precursor (.1) Potri.019G123200 [exp] 142 / 3e-41 AT5G60490 165 / 4e-50 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G151366 [exp] 140 / 1e-40 AT5G60490 167 / 7e-51 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G151300 [exp] 137 / 3e-39 AT5G03170 167 / 4e-51 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Potri.013G014200 [exp] 136 / 4e-39 AT5G60490 167 / 6e-51 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G151500 [exp] 135 / 8e-39 AT5G60490 167 / 4e-51 FASCICLIN-like arabinogalactan-protein 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019929 [exp] 234 / 8e-78 AT5G03170 295 / 2e-101 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10026499 [exp] 231 / 1e-76 AT5G03170 291 / 5e-100 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10033651 [exp] 140 / 1e-40 AT2G20520 234 / 2e-77 FASCICLIN-like arabinogalactan 6 (.1) Lus10002978 [exp] 139 / 2e-40 AT5G03170 209 / 1e-67 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036111 [exp] 136 / 3e-39 AT5G03170 209 / 1e-67 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036114 [exp] 136 / 4e-39 AT5G03170 191 / 3e-60 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10017696 [exp] 129 / 2e-36 AT2G20520 244 / 2e-81 FASCICLIN-like arabinogalactan 6 (.1) Lus10036115 [exp] 120 / 4e-33 AT5G03170 151 / 4e-45 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10002984 [exp] 120 / 5e-33 AT5G03170 192 / 1e-60 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036112 [exp] 120 / 6e-33 AT5G03170 197 / 1e-62 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02469 [poplar] [flax] Fasciclin Fasciclin domain
Representative CDS sequence Show only first row Show all	>Potri.016G088700.1 pacid=42809279 polypeptide=Potri.016G088700.1.p locus=Potri.016G088700 ID=Potri.016G088700.1.v4.1 annot-version=v4.1 ATGAGAAAGCAACTTCTCTCCCCATTCGTTCCTTTCTTGATGTTCTTCCTCTACAGCTCCACCACTTTTGCTCAAACCCCATCTCCAGCACCTTCAGGTC CAACCAACATAACGGCGATCCTTGCGAAAGCTGGTCAGTTCACAACCTTAATTCGGTTGTTGAAAAGCACCCAAGAGGCTGACCAAATCAACACACAACT CAACAATTCAAACCAAGGCCTAACAGTCTTTGCACCAACTGATAATTCCTTTGCTAACCTCAAAGCAGGTACACTGAATTCGCTCAGCGACCAACAAAAG GTCCAATTGGTGCAATTTCACATCCTTCCAAATTTCCTTTCCATGTCAAACTTCCAAACTGTCAGCAATCCCTTGCGCACTCAAGCCGGAAATAGTGCTG ATGGCGAGTTCCCGCTCAATGTGACAACATCGGGGAATCAAGTGAACATAACAACAGGGGTTAATACTGCAACCGTGGCAAACACTATATACACCGATGG CCAGTTAGTTGTGTATCAGGTGGATCAGGTCCTTCTGCCGTTGGATCTTTTTGGTACAGCACCAGCACCAGCTCCTGCACCTTCAAAGCCCGAGAAAGAT GTTCCAGCAAAAGCTCCTGCAGGGTCCAAGGAAGATGCATCTGTTGATAGTTCAGGTGCATCCATTGCAACAGTATCCTTCGGTGTTGTGCTGATCGCAG CAATTTCATTGAAGCTATGA
AA sequence Show only first row Show all	>Potri.016G088700.1 pacid=42809279 polypeptide=Potri.016G088700.1.p locus=Potri.016G088700 ID=Potri.016G088700.1.v4.1 annot-version=v4.1 MRKQLLSPFVPFLMFFLYSSTTFAQTPSPAPSGPTNITAILAKAGQFTTLIRLLKSTQEADQINTQLNNSNQGLTVFAPTDNSFANLKAGTLNSLSDQQK VQLVQFHILPNFLSMSNFQTVSNPLRTQAGNSADGEFPLNVTTSGNQVNITTGVNTATVANTIYTDGQLVVYQVDQVLLPLDLFGTAPAPAPAPSKPEKD VPAKAPAGSKEDASVDSSGASIATVSFGVVLIAAISLKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Potri.016G088700 [exp]	0	1	Pt-FLA11.2
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Potri.006G129200 [exp]	1.00	0.9675	Pt-FLA11.1
AT1G73140		TBL31	Plant protein of unknown funct...		Potri.001G376700 [exp]	2.44	0.9640
AT3G10700		GalAK	galacturonic acid kinase (.1)		Potri.006G070500 [exp]	2.82	0.9632
AT1G12000			Phosphofructokinase family pro...		Potri.011G015600 [exp]	3.16	0.9651
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Potri.013G053500 [exp]	4.47	0.9622
AT1G20530			Protein of unknown function (D...		Potri.005G249400 [exp]	5.47	0.9452
AT1G30630			Coatomer epsilon subunit (.1)		Potri.011G155800 [exp]	5.91	0.9578	COPE2.1
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Potri.011G064400 [exp]	6.40	0.9394
AT5G27490			Integral membrane Yip1 family ...		Potri.005G033900 [exp]	6.63	0.9540
AT4G31480			Coatomer, beta subunit (.1.2)		Potri.018G007400 [exp]	7.48	0.9575

Compare expression of checked genes

Potri.016G088700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.