Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53390 813 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT2G37160 783 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G52820 50 / 3e-06 WD-40 repeat family protein / notchless protein, putative (.1) AT5G16750 49 / 6e-06 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) AT2G43770 49 / 8e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 48 / 2e-05 TAF5 TBP-associated factor 5 (.1) AT4G15900 47 / 2e-05 PRL1 pleiotropic regulatory locus 1 (.1) AT2G41500 47 / 4e-05 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT3G16650 45 / 8e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT5G49430 45 / 0.0002 WD40/YVTN repeat-like-containing domain;Bromodomain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G129100 [exp] 891 / 0 AT2G37160 811 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G045800 [exp] 53 / 4e-07 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.009G058000 [exp] 52 / 7e-07 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.005G148500 [exp] 49 / 4e-06 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.018G020200 [exp] 50 / 5e-06 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.006G263400 [exp] 48 / 2e-05 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.007G107900 [exp] 46 / 7e-05 AT4G21130 505 / 2e-176 EMBRYO DEFECTIVE 2271, Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G012800 [exp] 44 / 0.0002 AT4G15900 731 / 0.0 pleiotropic regulatory locus 1 (.1) Potri.005G061000 [exp] 44 / 0.0002 AT4G21130 513 / 9e-180 EMBRYO DEFECTIVE 2271, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019930 [exp] 761 / 0 AT3G53390 794 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10026500 [exp] 755 / 0 AT3G53390 785 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10000150 [exp] 434 / 5e-151 AT3G53390 434 / 3e-151 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039597 [exp] 52 / 6e-07 AT5G52820 792 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10029493 [exp] 51 / 2e-06 AT5G52820 786 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10024447 [exp] 50 / 5e-06 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10039636 [exp] 49 / 7e-06 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10008853 [exp] 49 / 8e-06 AT1G30460 563 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30, cleavage and polyadenylation specificity factor 30 (.1.2) Lus10023255 [exp] 49 / 1e-05 AT4G21130 517 / 0.0 EMBRYO DEFECTIVE 2271, Transducin/WD40 repeat-like superfamily protein (.1) Lus10037748 [exp] 48 / 3e-05 AT5G49430 1224 / 0.0 WD40/YVTN repeat-like-containing domain;Bromodomain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.016G088800.2 pacid=42809682 polypeptide=Potri.016G088800.2.p locus=Potri.016G088800 ID=Potri.016G088800.2.v4.1 annot-version=v4.1 ATGATCAACTCCAGCAACGGCATGATTTCAACGTCATCGACGTCGGCGAACACGCAATCACCGGGGTTAAAGACTTATTTTAAAACCCCAGAAGGACGTT ATAAGCTTCACTATGAAAAGACACATCCTTCTGGTCTCCTTCACTACGCCCATGGCAAAACTGTTACTCAGGTAACCCTAGCTATTATCAAGGACAAGCC TGCCCCATCAACACCGATGGCCCCACCTTCAGGTTTCAGTACGGGCAGTGGTGTACGATCAGCTGCTGCTAGGTTGTTGGGTGCTAGTAATGGAAGCCGT GCGCTTAGCTTTGTTGGAGGGAATGGTGGGAGTAAAAGTATTAGCAGTAGCAGTAGTAGTAGTAGTAGTAGTAGTAGGATTGGATCATTGGGGACATCAT GCTCAAGTAATTCCATGATCAATTCAAATTTTGATGGGAAAGGGACTTACTTGATCTTCAATGTAGGGGATGCCATCTTTATAACTGATTTAAATTCTCA AGATAAGGAGGACCCAATAAAATCGATCCATTTTAGTAATTCAAATCCTGTGTGCCATGCCTTTGATCAAGATGCTAAGGATGGACATGATTTGCTTATT GGCTTGAGTTCTGGGGATGTCTACTCAGTGTCACTGAGACAGCAATTACAGGATGTTGGAAAAAAGCTAGTTGGGGCCCATCATTATAACAAAGATGGTT CTGTTAATAATAGTCGTTGTATGAGTATTGCATGGGTTCCTGGAGGAGATGGTGCTTTTGTTGTTGCACATGCTGATGGTAATTTGTATGTCTATGAAAA GAGCAAGGATGGTGCTGGTGATTCTTCATTCCCTGTTATCAAAGATCAAACTCAATTCTCTGTTTCACATGCCCGCTACAGTAAGAGTAACCCAATTGCC AGATGGCATATTTGCCAAGGTTCAATCAATGGCATTGCTTTCTCAAATGAAGGGGCCTATTTAGCAACTGTTGGAAGAGATGGTTACTTGCGAGTCTTTG ACTATTCAAAAGAACAACTTATATGTGGTGGGAAAAGTTATTATGGTGCTCTACTATGTTGTGCTTGGAGCATGGATGCAAAATATATTTTGACTGGAGG AGAAGATGACCTAGTTCAAGTTTGGAGTATGGAAGATCGGAAGGTTGTTGCGTGGGGTGAAGGACACAATTCATGGGTAAGTGGAGTGGCTTTTGATTCA TATTGGTCATCACCAAACTCAGATGGCACAGGGGAGAATGTTGTGTACCGGTTTGGTTCTGTTGGTCAGGACACACAGTTACTTTTATGGGATCTGGAAA TGGATGAGATTGTAGTGCCATTACGTAGGTGCCCCCCTCCTGGTGGATCTCCTACTTTCAGTACTGGAAGTCAGTCTTCCCACTGGGACAGTGTTATCCC AGTTGGAACTCTGCAACCTGCTCCTAGCATGCGTGATGTTCCAAAGCTTTCTCCTGTAGTGGCTCACCGTGTTCACACGGAACCTCTTTCTGGTTTAGTA TTTACGCAGGAATGTGTTCTTACTGTTTGTAGAGAGGGCCATGTAAAAATCTGGATGAGACCTGGAGCCTTAGATAGCCAGTCAGGCAACTCGGAAACCA TCCCAAGTACCAGTTTGAAGGAGAAGCCATTATTGTCAAGCAAGATTGGCAGTTCTACATATAAGCAATGA
AA sequence Show only first row Show all	>Potri.016G088800.2 pacid=42809682 polypeptide=Potri.016G088800.2.p locus=Potri.016G088800 ID=Potri.016G088800.2.v4.1 annot-version=v4.1 MINSSNGMISTSSTSANTQSPGLKTYFKTPEGRYKLHYEKTHPSGLLHYAHGKTVTQVTLAIIKDKPAPSTPMAPPSGFSTGSGVRSAAARLLGASNGSR ALSFVGGNGGSKSISSSSSSSSSSSRIGSLGTSCSSNSMINSNFDGKGTYLIFNVGDAIFITDLNSQDKEDPIKSIHFSNSNPVCHAFDQDAKDGHDLLI GLSSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCMSIAWVPGGDGAFVVAHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVSHARYSKSNPIA RWHICQGSINGIAFSNEGAYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDAKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDS YWSSPNSDGTGENVVYRFGSVGQDTQLLLWDLEMDEIVVPLRRCPPPGGSPTFSTGSQSSHWDSVIPVGTLQPAPSMRDVPKLSPVVAHRVHTEPLSGLV FTQECVLTVCREGHVKIWMRPGALDSQSGNSETIPSTSLKEKPLLSSKIGSSTYKQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53390			Transducin/WD40 repeat-like su...		Potri.016G088800 [exp]	0	1
AT3G15920			Phox (PX) domain-containing pr...		Potri.001G201900 [exp]	1.00	0.8028
AT3G05090		LRS1	LATERAL ROOT STIMULATOR 1, Tra...		Potri.005G046500 [exp]	10.39	0.7534
AT4G28990			RNA-binding protein-related (....		Potri.018G083100 [exp]	10.53	0.7933
AT3G51830		ATG5, SAC8	SAC domain-containing protein ...		Potri.016G118300 [exp]	13.96	0.7305	ATG5.1
AT4G27190			NB-ARC domain-containing disea...		Potri.018G145556 [exp]	14.69	0.7251
AT3G07530			unknown protein		Potri.004G236000 [exp]	14.96	0.7078
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Potri.012G089700 [exp]	15.65	0.6961
					Potri.010G031250 [exp]	18.97	0.7649
AT5G65960			GTP binding (.1)		Potri.007G064500 [exp]	19.89	0.7179
AT1G31480		SGR2	shoot gravitropism 2 (SGR2) (....		Potri.013G099700 [exp]	24.65	0.7596	SGR2.1

Compare expression of checked genes

Potri.016G088800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.