Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53400 420 / 6e-144 unknown protein AT5G03190 388 / 1e-131 CPuORF47 conserved peptide upstream open reading frame 47 (.1.2.3) AT5G01710 143 / 3e-37 methyltransferases (.1) AT1G58120 80 / 4e-16 unknown protein AT1G24480 69 / 6e-13 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G24805 64 / 2e-11 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G128800 [exp] 762 / 0 AT3G53400 418 / 3e-143 unknown protein Potri.006G105100 [exp] 149 / 1e-39 AT5G01710 720 / 0.0 methyltransferases (.1) Potri.016G128100 [exp] 149 / 2e-39 AT5G01710 740 / 0.0 methyltransferases (.1) Potri.013G153300 [exp] 116 / 4e-28 AT5G01710 498 / 1e-173 methyltransferases (.1) Potri.002G104500 [exp] 80 / 6e-16 AT1G58120 283 / 1e-91 unknown protein Potri.010G052100 [exp] 68 / 8e-13 AT1G24480 327 / 5e-114 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G088400 [exp] 65 / 1e-11 AT1G24480 302 / 3e-104 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.017G047700 [exp] 61 / 1e-09 AT1G58120 254 / 6e-81 unknown protein Potri.007G113200 [exp] 54 / 2e-07 AT1G58120 252 / 6e-80 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026502 [exp] 459 / 1e-159 AT3G53400 392 / 1e-133 unknown protein Lus10019932 [exp] 448 / 2e-155 AT3G53400 385 / 1e-130 unknown protein Lus10014232 [exp] 154 / 2e-41 AT5G01710 697 / 0.0 methyltransferases (.1) Lus10001267 [exp] 153 / 6e-41 AT5G01710 737 / 0.0 methyltransferases (.1) Lus10012217 [exp] 151 / 3e-40 AT5G01710 733 / 0.0 methyltransferases (.1) Lus10022682 [exp] 132 / 1e-33 AT5G01710 698 / 0.0 methyltransferases (.1) Lus10006247 [exp] 67 / 2e-12 AT1G24480 348 / 2e-122 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036941 [exp] 67 / 3e-12 AT1G24480 354 / 1e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10013662 [exp] 59 / 1e-09 AT4G24805 299 / 1e-102 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10022081 [exp] 53 / 4e-07 AT1G20960 218 / 1e-68 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF08241 [poplar] [flax] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.016G088900.1 pacid=42810243 polypeptide=Potri.016G088900.1.p locus=Potri.016G088900 ID=Potri.016G088900.1.v4.1 annot-version=v4.1 ATGCCAATTTCGTGGTTAAGAGTGGAACACAACATGAATTCGAAGGCCTTGAGATACCAGATCCTTAGTGGATCAATAGCCCGGCGTGTGCTTCTACGTG CATCTATGCTTGTCACGGCAATGTCCATCATTCCTTTGTTACTGTTCTTATATGGGTCTGATCCTGGATTATTGTTTGATTCTGTGAGGTATAATGAATG TGATGTACCCTTTATGTTTATGGATCCACATTTGTTGAAGAATCGATTTTTGAAGCCAATCTGGGGCTCAATTGATGGTGAGGAAGGTGTGAATGTGACT ACTAATGTTGTTAGAGAGCTTCTGGGCATGCAGATCATAGATCCTAGTGCAAAAGTTCTCTGTGTCGGTGAAGGATCTGCTCCTGCAGTTTTTGCATTAC GAGAATTAGGATTTCTCAATGCTTGTGGGGCTCACAGACACCCCTTTTTCTCTCTTAAGCATAAGAGGATGGCTTATGAGCTTGAATATGCAGACGATTC CTTTGATTTTGTGTTGTCTGGGGACCTAGAAAAGATTTCCGTCCCAGCCATTGTTGTGCTCGAGAGCGAGCGTGTGCTTAAGCCTGGTGGAATTGGGGCT ATGCTTGTTGGTGTTGACAGTTTTAACACCAATAACCTGATTAGGTCTTCCTTGCCTGTGTCATCATTATTAAAGAATTCCAACATTGTCCATGTTGGTT ATGTCAACGAGTATACACTGGTTGTTTTCAAGAAAAGAATTTACAGTGTCGGCTACTTCCAGCAATACCAGCTACCAGCTGATTGCCCATCTATCATGAA TAATAGACCTCATTTGGAGAATTTAGAACCTCTCACAGAGAATAAGCAAGTGGAACATGAGAAAAACATAGCTTATTTGCCCAAGTTTGTTGATATGCCC TCTAGGAAGCGATTAGTGTATGTTGAGATTGGGGGAGGTGAGCATCTGAATTCTAGTGTTTCAAGTTGGTTCTTGCCGTCTTATCCTGTGGATCGCAACA CTTTCAATGTTTATTTTGTCGACCATAACGCTTCGGTCCTGCTTTCTGGTGTTAAAAAACCTGGTGTTGCCTTCATTTATTATCCTGGCCTTGCTGGAGT TGAGGCTACTCTTAATCCTGATGTGGAAGAGTTTGATCAATCTGTGGAAGATGAAGGGTTTGATTTTCTTGATTGGTTTAAGCAAACAGTGCAGCATGCT GACTTTGTGGTGCTAAAAATGAAAGCAGGGAAGGTGGAACTGAGATTTCTGTCTGGTCTGTTCCAAAGCGGAGCTGTATGCTTTATTGATGAGCTGTTCC TCAGTTGCTCAGATCAAGTTGGTGGAAACTGCTTGGACCTCTTCAAGAGCCTTAGAAGCAGCGGTGTGTTTCTCCATCAGTGGTGGGGAGACTAA
AA sequence Show only first row Show all	>Potri.016G088900.1 pacid=42810243 polypeptide=Potri.016G088900.1.p locus=Potri.016G088900 ID=Potri.016G088900.1.v4.1 annot-version=v4.1 MPISWLRVEHNMNSKALRYQILSGSIARRVLLRASMLVTAMSIIPLLLFLYGSDPGLLFDSVRYNECDVPFMFMDPHLLKNRFLKPIWGSIDGEEGVNVT TNVVRELLGMQIIDPSAKVLCVGEGSAPAVFALRELGFLNACGAHRHPFFSLKHKRMAYELEYADDSFDFVLSGDLEKISVPAIVVLESERVLKPGGIGA MLVGVDSFNTNNLIRSSLPVSSLLKNSNIVHVGYVNEYTLVVFKKRIYSVGYFQQYQLPADCPSIMNNRPHLENLEPLTENKQVEHEKNIAYLPKFVDMP SRKRLVYVEIGGGEHLNSSVSSWFLPSYPVDRNTFNVYFVDHNASVLLSGVKKPGVAFIYYPGLAGVEATLNPDVEEFDQSVEDEGFDFLDWFKQTVQHA DFVVLKMKAGKVELRFLSGLFQSGAVCFIDELFLSCSDQVGGNCLDLFKSLRSSGVFLHQWWGD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53400			unknown protein		Potri.016G088900 [exp]	0	1
AT1G78780			pathogenesis-related family pr...		Potri.011G108900 [exp]	8.00	0.6781
AT2G18630			Protein of unknown function (D...		Potri.005G127200 [exp]	15.65	0.5965
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Potri.006G126800 [exp]	22.58	0.6663	PAL3,Pt-PAL1.2
					Potri.001G379150 [exp]	27.42	0.6629
AT5G04830			Nuclear transport factor 2 (NT...		Potri.008G017701 [exp]	28.16	0.6327
AT1G58602			LRR and NB-ARC domains-contain...		Potri.011G031312 [exp]	48.78	0.6320
AT1G48120			hydrolases;protein serine/thre...		Potri.004G068801 [exp]	52.76	0.6124
AT1G06990			GDSL-like Lipase/Acylhydrolase...		Potri.008G076600 [exp]	58.30	0.6237
AT3G15820		ROD1	REDUCED OLEATE DESATURATION 1,...		Potri.003G032200 [exp]	67.34	0.5881
AT5G39250			F-box family protein (.1)		Potri.017G092800 [exp]	90.11	0.5896

Compare expression of checked genes

Potri.016G088900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.