Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09770 300 / 2e-100 LOG2 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) AT3G53410 261 / 1e-85 RING/U-box superfamily protein (.1) AT5G03200 256 / 3e-83 RING/U-box superfamily protein (.1) AT5G19080 203 / 3e-62 RING/U-box superfamily protein (.1) AT3G06140 178 / 1e-52 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G128700 [exp] 451 / 2e-159 AT3G09770 380 / 4e-131 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Potri.008G202700 [exp] 215 / 2e-66 AT5G19080 340 / 4e-115 RING/U-box superfamily protein (.1) Potri.010G030600 [exp] 203 / 6e-62 AT3G06140 344 / 7e-117 RING/U-box superfamily protein (.1) Potri.005G036400 [exp] 196 / 1e-58 AT3G06140 296 / 2e-97 RING/U-box superfamily protein (.1) Potri.013G025400 [exp] 194 / 6e-58 AT5G19080 303 / 5e-100 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015080 [exp] 360 / 3e-123 AT3G09770 364 / 9e-125 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Lus10023182 [exp] 343 / 1e-117 AT3G09770 364 / 5e-126 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Lus10037412 [exp] 271 / 9e-89 AT3G09770 351 / 6e-120 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Lus10041300 [exp] 269 / 6e-88 AT3G09770 352 / 3e-120 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Lus10034030 [exp] 213 / 1e-65 AT5G19080 344 / 1e-116 RING/U-box superfamily protein (.1) Lus10004419 [exp] 213 / 1e-65 AT3G06140 350 / 4e-119 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.016G089000.2 pacid=42809071 polypeptide=Potri.016G089000.2.p locus=Potri.016G089000 ID=Potri.016G089000.2.v4.1 annot-version=v4.1 ATGGGAAACATCAGCAGCAACAACGTTAACGGCCGAAGGAGACACGGAAGCCGGCAGAGCCACCCTCCACCGCCCCCACCAGCACCCCCGCAGCCGGAAA TCACGCCCAGCCGTTACGTTTTCACGGCGGCAACGCCTTACCCTTCGCAATACCCTAACCCTAACCCCCCACCATATTATCAGTACCCTGGGTACTATCC ACCCGCGATGCCCGTGCAGTCGCCAGCTCCGTACGATCACCGCAACCGGGTGGACCACCCGGCGGCTCATTGGGTAGGAGGGAGGTACCCAGTGATGCCC CAACCGGCTCCTTATGTAGAGCACCAGAAGACGGTCACTATAAGGAGCGATGTTAATTTGAAGAAGGAGAGTTTGAGGCTTGAACCGGATGAGGAGAATC CAGGGAGCTATCTTGTTACTTTCACATTTGATGCTACTGTTGCTGGAAGCATCACTATTATTTTCTTTGCGAAAGAAGGTGAGGATTGTGTCCTGACACC AACGAAGGCAGACCTTCCACCAGTGACAGTAAATTTCCCACAAGGTCTGGGCCAGAAGTTCAGACAGCCTTCTGGAACAGGGATTGATTTCACCTTGTTT GAGGGGAAAGAGTTGTTAAAAGAGGGTGAGATGGATGCCTATCCTCTAGCAGTAAAGGCAGAGGCATCCCCTGCAAATCATAATGGAACAGAAGGAAACC AAATGTCTGAACCTATGAACTCTCAGGTAACGCAAGCAATATTTGAGAAGGAGAAAGGAGAGTACCAAGTGAGGGTAATGAAGCAGATCCTCTGGGTTAA TGGGAGGAGATATGAGCTTCAGGAGATATATGGGATTGGAAATTCAGTTGAGGGTGATGTTGATGCAAATGACCCAGGTAAAGAATGTGTCATTTGCCTG TCAGAACCACGGGACACTACTGTTCTTCCTTGCCGACACATGGTAAGCCTCTCCCTCCCTGTGTGTGTGTGTGTGCACGCGAAGGGGAAATACAAGGAAG TGATGCTCTTCACCCACAGTTCATATTTTAGGGAATTGCTTTTCAACCAAGGACTATTTATCGTTTTGGAATTTTGTTCTTTTAAGTTGTGA
AA sequence Show only first row Show all	>Potri.016G089000.2 pacid=42809071 polypeptide=Potri.016G089000.2.p locus=Potri.016G089000 ID=Potri.016G089000.2.v4.1 annot-version=v4.1 MGNISSNNVNGRRRHGSRQSHPPPPPPAPPQPEITPSRYVFTAATPYPSQYPNPNPPPYYQYPGYYPPAMPVQSPAPYDHRNRVDHPAAHWVGGRYPVMP QPAPYVEHQKTVTIRSDVNLKKESLRLEPDEENPGSYLVTFTFDATVAGSITIIFFAKEGEDCVLTPTKADLPPVTVNFPQGLGQKFRQPSGTGIDFTLF EGKELLKEGEMDAYPLAVKAEASPANHNGTEGNQMSEPMNSQVTQAIFEKEKGEYQVRVMKQILWVNGRRYELQEIYGIGNSVEGDVDANDPGKECVICL SEPRDTTVLPCRHMVSLSLPVCVCVHAKGKYKEVMLFTHSSYFRELLFNQGLFIVLEFCSFKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Potri.016G089000 [exp]	0	1
AT4G07950			DNA-directed RNA polymerase, s...		Potri.012G015900 [exp]	1.00	0.9019
AT1G79870			D-isomer specific 2-hydroxyaci...		Potri.013G046150 [exp]	3.16	0.8892
					Potri.007G016466 [exp]	3.74	0.8585
AT2G27350		OTLD1	otubain-like deubiquitinase 1,...		Potri.004G196800 [exp]	6.32	0.8572
AT3G53710		AGD6	ARF-GAP domain 6 (.1.2)		Potri.016G095100 [exp]	6.32	0.8552
AT4G20325			unknown protein		Potri.006G280600 [exp]	7.34	0.8875
AT5G43960			Nuclear transport factor 2 (NT...		Potri.014G192900 [exp]	7.74	0.8731
AT5G43650	bHLH	BHLH92, bHLH092	basic helix-loop-helix (bHLH) ...		Potri.008G161800 [exp]	7.74	0.8391
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Potri.016G122801 [exp]	8.18	0.8026
AT4G00660		ATRH8	RNAhelicase-like 8 (.1.2)		Potri.014G081100 [exp]	8.30	0.8338

Compare expression of checked genes

Potri.016G089000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.