Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09780 945 / 0 CCR1, ATCRR1 CRINKLY4 related 1 (.1) AT2G39180 759 / 0 CCR2, ATCRR2 CRINKLY4 related 2 (.1) AT3G59420 327 / 4e-99 ACR4 crinkly4 (.1) AT5G47850 232 / 1e-65 CCR4 CRINKLY4 related 4 (.1) AT5G02800 179 / 7e-50 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT3G15890 177 / 4e-49 Protein kinase superfamily protein (.1) AT3G58690 177 / 9e-49 Protein kinase superfamily protein (.1) AT3G24550 181 / 5e-48 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT3G24790 172 / 2e-47 Protein kinase superfamily protein (.1) AT1G01540 174 / 6e-47 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G221200 [exp] 927 / 0 AT2G39180 899 / 0.0 CRINKLY4 related 2 (.1) Potri.017G029900 [exp] 336 / 3e-102 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.007G128400 [exp] 325 / 3e-98 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.019G078300 [exp] 236 / 1e-66 AT5G47850 699 / 0.0 CRINKLY4 related 4 (.1) Potri.008G068700 [exp] 216 / 1e-59 AT3G55950 786 / 0.0 CRINKLY4 related 3 (.1) Potri.010G188600 [exp] 209 / 6e-57 AT3G55950 791 / 0.0 CRINKLY4 related 3 (.1) Potri.009G055200 [exp] 181 / 2e-49 AT3G51990 409 / 7e-141 Protein kinase superfamily protein (.1) Potri.005G158600 [exp] 180 / 6e-49 AT1G28390 397 / 3e-134 Protein kinase superfamily protein (.1.2) Potri.014G143100 [exp] 177 / 8e-49 AT3G58690 573 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041404 [exp] 836 / 0 AT2G39180 849 / 0.0 CRINKLY4 related 2 (.1) Lus10036524 [exp] 833 / 0 AT2G39180 848 / 0.0 CRINKLY4 related 2 (.1) Lus10015956 [exp] 337 / 4e-103 AT3G59420 1258 / 0.0 crinkly4 (.1) Lus10000764 [exp] 332 / 3e-101 AT3G59420 1255 / 0.0 crinkly4 (.1) Lus10029170 [exp] 224 / 1e-62 AT5G47850 678 / 0.0 CRINKLY4 related 4 (.1) Lus10040050 [exp] 176 / 3e-48 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Lus10040467 [exp] 179 / 4e-48 AT4G34440 501 / 7e-172 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10023473 [exp] 174 / 7e-48 AT5G18610 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040350 [exp] 174 / 9e-48 AT5G18610 569 / 0.0 Protein kinase superfamily protein (.1.2) Lus10001323 [exp] 174 / 2e-47 AT1G52540 353 / 3e-120 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.016G089200.1 pacid=42809618 polypeptide=Potri.016G089200.1.p locus=Potri.016G089200 ID=Potri.016G089200.1.v4.1 annot-version=v4.1 ATGCAGTTACAATCTTGCTTCATTGGCCTCTTTCTCCTCCTCTCTTGTATTTCTGCATCTGGGTTTGGATCCATGGGCCCCATCTCCGCCGCATTTGGCG ACCATGCCTTCTTCTGCGCCATCGACGCTAGTGGCAAGCAAGATGTTATTTGTTGGATAAAGAATAACACTTTGCCACCATCATCATCCTCAGCTTCTAC ATCTGCTTATTTTAGTAATATTGGTCCCATAGCAGCTCTATCAGGCGGCGAAGGATTTCTTTGCGGAATCTTAGCTAATAACTCACAAGTATTCTGTTGG AGCTCAGTTTATTCAGGTCCAGATCTTGTTCCTTCAGTTTATAGGAACACAGCTTATTCTCATATTGCAGCAGGAAAGAATCATGTGTGCGCTATTAGAG GATCTTATTACTCTGATCATGATTCCGGCACGATTGATTGTTGGAATATTATCAACGGTGCTAATAACAGTTTAACTTCTGTACAGGGCACTGGTGTCTT TTATGACCAATCTATTAGTAATCTTGTGTTTGATAAGGTTGTTTCTGGTGAAGAGTTTAGTTGTGGTGGGGTTAGAGGAAGAGGGGTTGTTTGTTGGGGA CCGAACAAAGATAGGTTCGGCGTTTCGAATTTCTCCGAGAATTACATGGTTTTAGCTTCAGGGAGGGATTCCGTTTGTGGGATTTTGGAGGGGTCTAATG ATGTCAAATGCTGGGGCAATAGTACTAATTCATATTCAACCCCTCCCGTTGGGACCCGTTTTGTGTCGCTAACTGCTGGAACTAACCATTTCTGTCGGAT TAGGGAGGATAATCATGCAGTCGAGTGTTGGGGAAGTTTCAATTCATCTTTAATTCCAAAGGGTGGTTCTGGGTTTATGGCGATTGCTTCGTCTGATTTC ACGACATGTGGGATAAGGGAAGATGATTTGGTTATTGATTGCTGGTTTGCTAACGGGACTTTGCCACCAGATTACAGTCCTCCTTTGGAGTTGTGCAGCC CAGGGCTATGTAGTCCTCGTTCTTGCGGTGAAGGGGAGTTTGTTTTCAATGCAAGCATTCTAAATGAACCGGACTTGACAAGCTTGTGTGTTAGAAAGGA CTTAAAGATTTGTTCTCCATGTGGGTCAAATTGTTCTGAAGGTTTTTTCTTATCTAGTCCTTGTACTGAGAATGCCGATAGAGTATGCACAGCTTGCTCT CTTTGCCAGAACAGTTCTTGTTGGGATGTTTGTGGGTTGAAATCATCTAATGAGAAGCAATGGCACAACTTGCGCAGATTAGCAGTCATAATTGGTTCTT CTGCTTTGGGTTTCTTGTTGATATTAGTTAGTTGGTGTGTTCTTCCATGTTTATTCTCCAGCCGAAACGAAGAAAGAGCAAAGAATCAATTTCATTCTTG TATCGGCAAACCAGAGCTGGAAGCTGACGTTGCTTCTGATTCTCACCTTCCTCAATCCATCACTCCTTGTCCTGGGAAGGCTCAAGTTTTCCGACTATCA GAGCTTAAAGATGTCACCAATGGATTCAGAGAGTTCAACGAGCTTGGTCGAGGAAGCTATGGTTTTGTTTATAAAGCAGTTCTAGCTGATGGGAGACAGG TTGCAGTCAAAAGGGCAAATGCTGCCACGATAATTCACTCTAATAGCAGGAATTTTGACATGGAATTGGAGGTCCTCTGCAACGTTCGGCATTGCAATAT TGTGAACTTGTTAGGTTACTGCTCAGAAATGGGGGAAAGGCTGCTTGTCTACGAGTATATGCCCCATGGCACGCTTCATGATCACCTCCATGGTGGGCTT TCTCCTCTGAATTGGAGCCTTAGGTTGAAGATTTCAATGCAGGCTGCCAAGGGACTTGAGTACCTTCACAAGGAAGCAGAACCGCCAATTGTCCATCATA ATGTCCAGACTTCAAACATCCTTTTGGATTCTGACTGGGGAGCACGAATCGCAGATTTTGGGCTTCTTTCAGCAAATGAGAAGGATCTTTGTGGAGATAT GAAAAGTGATGTATACAACTTTGGAATTGTACTGCTAGAGATTCTTAGCGGAAGAAAAACCTATGATAGAGATTACACTCCACCAAATATTGTTGAGTGG GCTGTGCCATTAATTAAACAGGGCAAAGCAGCTGCCATAATTGATAGATATGTGACTTTTCCAAGAAATGTCGAGTCCCTACTTAAAGTTGCCGATATAG CAGAATTGGCTGTGAGGGAAAATCCTAACGAGCGACCTACTATGTCGGATGTGGCAACCTTTCTAGAGCAAATTGTGAAGGATGGATTGCTCTTGTAG
AA sequence Show only first row Show all	>Potri.016G089200.1 pacid=42809618 polypeptide=Potri.016G089200.1.p locus=Potri.016G089200 ID=Potri.016G089200.1.v4.1 annot-version=v4.1 MQLQSCFIGLFLLLSCISASGFGSMGPISAAFGDHAFFCAIDASGKQDVICWIKNNTLPPSSSSASTSAYFSNIGPIAALSGGEGFLCGILANNSQVFCW SSVYSGPDLVPSVYRNTAYSHIAAGKNHVCAIRGSYYSDHDSGTIDCWNIINGANNSLTSVQGTGVFYDQSISNLVFDKVVSGEEFSCGGVRGRGVVCWG PNKDRFGVSNFSENYMVLASGRDSVCGILEGSNDVKCWGNSTNSYSTPPVGTRFVSLTAGTNHFCRIREDNHAVECWGSFNSSLIPKGGSGFMAIASSDF TTCGIREDDLVIDCWFANGTLPPDYSPPLELCSPGLCSPRSCGEGEFVFNASILNEPDLTSLCVRKDLKICSPCGSNCSEGFFLSSPCTENADRVCTACS LCQNSSCWDVCGLKSSNEKQWHNLRRLAVIIGSSALGFLLILVSWCVLPCLFSSRNEERAKNQFHSCIGKPELEADVASDSHLPQSITPCPGKAQVFRLS ELKDVTNGFREFNELGRGSYGFVYKAVLADGRQVAVKRANAATIIHSNSRNFDMELEVLCNVRHCNIVNLLGYCSEMGERLLVYEYMPHGTLHDHLHGGL SPLNWSLRLKISMQAAKGLEYLHKEAEPPIVHHNVQTSNILLDSDWGARIADFGLLSANEKDLCGDMKSDVYNFGIVLLEILSGRKTYDRDYTPPNIVEW AVPLIKQGKAAAIIDRYVTFPRNVESLLKVADIAELAVRENPNERPTMSDVATFLEQIVKDGLLL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G09780		CCR1, ATCRR1	CRINKLY4 related 1 (.1)		Potri.016G089200 [exp]	0	1
AT5G49800			Polyketide cyclase/dehydrase a...		Potri.004G231000 [exp]	4.24	0.8486
					Potri.012G066225 [exp]	4.47	0.8757
AT5G13980			Glycosyl hydrolase family 38 p...		Potri.012G106500 [exp]	8.48	0.8714
AT1G68570			Major facilitator superfamily ...		Potri.006G034000 [exp]	13.74	0.7561	NITR1.3
AT1G70940		PIN3, ATPIN3	ARABIDOPSIS PIN-FORMED 3, Auxi...		Potri.008G129400 [exp]	14.31	0.8136	PIN3.2,PIN6
AT3G23750			Leucine-rich repeat protein ki...		Potri.005G049200 [exp]	15.96	0.8653
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Potri.008G061300 [exp]	16.49	0.8351	RAB11.9
AT1G65450			HXXXD-type acyl-transferase fa...		Potri.002G244600 [exp]	19.59	0.8099
AT3G26050			TPX2 (targeting protein for Xk...		Potri.008G180900 [exp]	23.49	0.8270
					Potri.017G119750 [exp]	24.24	0.8411

Compare expression of checked genes

Potri.016G089200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.