Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58750 854 / 0 CSY2 citrate synthase 2 (.1) AT2G42790 854 / 0 CSY3 citrate synthase 3 (.1) AT3G58740 715 / 0 CSY1 citrate synthase 1 (.1) AT3G60100 108 / 3e-25 CSY5 citrate synthase 5 (.1) AT2G44350 107 / 6e-25 CSY4, ATCS CITRATE SYNTHASE 4, Citrate synthase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G141900 [exp] 911 / 0 AT3G58750 867 / 0.0 citrate synthase 2 (.1) Potri.001G230500 [exp] 106 / 2e-24 AT2G44350 792 / 0.0 CITRATE SYNTHASE 4, Citrate synthase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010945 [exp] 845 / 0 AT2G42790 855 / 0.0 citrate synthase 3 (.1) Lus10031384 [exp] 778 / 0 AT3G58750 796 / 0.0 citrate synthase 2 (.1) Lus10019688 [exp] 107 / 5e-25 AT2G44350 784 / 0.0 CITRATE SYNTHASE 4, Citrate synthase family protein (.1.2) Lus10031385 [exp] 92 / 4e-22 AT3G58750 88 / 4e-21 citrate synthase 2 (.1) Lus10006943 [exp] 51 / 1e-06 AT2G44350 428 / 2e-148 CITRATE SYNTHASE 4, Citrate synthase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00285 [poplar] [flax] Citrate_synt Citrate synthase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.016G089300.1 pacid=42810338 polypeptide=Potri.016G089300.1.p locus=Potri.016G089300 ID=Potri.016G089300.1.v4.1 annot-version=v4.1 ATGTCAGAATCATCTATAATTGCTCGCGGGCGGTTGGCCGTGCTCACAGCTCATTTACTCGGAGCGCCCCTCGAATCGTCGGAGGACTCGGACATCCAGC GGTGGTGCGTGTCTGCTCAAGTCCCTACTCCTGGCGATCTCAAGGGCGTGTTAACTGTGATCGATGAGAGGACCGGTAAGAAATACCAAATTCAGGTCTC TCAAGACGGGACCGTCAAAGCCTCTGATTTCAAGAAGATCTCAACAGGAAAGAGTGACAAGGGGCTGAAATTGTATGATCCAGGATATCTGAATACAGCA CCTGTTATTTCAAAGATTTCATATATAGATGGTGATGAGGGTATCCTTAGATACAGAGGGTACCCTATTGAGGAATTGGCTGAGAGCAGTACCTTTTTGG AAGTAGCCTATCTCATTTTGTATGGGAATTTACCGTCTCAAAGTCAGTTAGCAGACTGGGAATTTGCCATTTCACAACATTCAGCTGTACCTCAGGGTGT TTTGGATATTATACAGGCAATGCCTCATGATGCACATCCAATGGGGGTGCTAGTCAGTGCAATGAGTTCCCTTTCCATCTTTCATCCTGATGCTAACCCA GCTCTTAGAGGGCAAGATCTTTACAAGTCAAAACAAGTGAGAGACAAACAGATTGCACGCATTCTTGGAAAGGCACCAACCATTGCAGCAGCAGCTTATT TGAGGTTGGCTGGTAGACCTCCAGTTCTGCCTTCTAGCAACCTTTCTTATTCAGAGAACTTCCTATACATGCTAGACTCATTGGGCAATAGATCATATAA ACCAAATCCTCGACTGGCTCGAGTTCTAGACATACTTTTCATACTGCACGCAGAACATGAAATGAATTGCTCCACTTCAGCTGCTCGACATCTTGCATCC AGTGGTGTCGATGTATACACTGCTCTTGCTGGGGCTGTTGGAGCATTGTATGGTCCTCTTCATGGTGGAGCAAATGAGGCTGTGCTTAAGATGCTGAGTG AGATTGGAACCATTGAAAACATTCCAGATTTCATCGAGGGTGTGAAGAACAGGAAGCGAAAGATGTCAGGTTTTGGGCATCGTGTGTATAAAAACTATGA TCCCAGAGCAAAAGTCATTAAGAAATTGGCAGAGGAAGTGTTTTCCATTGTTGGTCGGGATCCTCTTATCGAGGTAGCGGTTGCCTTGGAAAAAGCTGCT TTAGCTGATGAATATTTTGTTAAGAGGAAGCTGTATCCAAATGTTGATTTCTACTCTGGGTTAATATATAGGGCAATGGGATTCCCAACGGAGTTTTTCC CTGTCTTGTTTGCAATTCCTCGAATGGCTGGTTATTTAGCTCACTGGAGAGAATCACTGGATGATCCTGATACAAAGATAATGAGACCACAACAGGTTTA CACTGGCGAATGGTTGCGACATTATATGCCACTCAAAGAACGGATGATACAAACCGATGCGGATAGGCTTGGCCAAGTTTCCATTTCAAATGCCTCTAGG CGACGACTTGCTGGATCCGGGGTTTAG
AA sequence Show only first row Show all	>Potri.016G089300.1 pacid=42810338 polypeptide=Potri.016G089300.1.p locus=Potri.016G089300 ID=Potri.016G089300.1.v4.1 annot-version=v4.1 MSESSIIARGRLAVLTAHLLGAPLESSEDSDIQRWCVSAQVPTPGDLKGVLTVIDERTGKKYQIQVSQDGTVKASDFKKISTGKSDKGLKLYDPGYLNTA PVISKISYIDGDEGILRYRGYPIEELAESSTFLEVAYLILYGNLPSQSQLADWEFAISQHSAVPQGVLDIIQAMPHDAHPMGVLVSAMSSLSIFHPDANP ALRGQDLYKSKQVRDKQIARILGKAPTIAAAAYLRLAGRPPVLPSSNLSYSENFLYMLDSLGNRSYKPNPRLARVLDILFILHAEHEMNCSTSAARHLAS SGVDVYTALAGAVGALYGPLHGGANEAVLKMLSEIGTIENIPDFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIKKLAEEVFSIVGRDPLIEVAVALEKAA LADEYFVKRKLYPNVDFYSGLIYRAMGFPTEFFPVLFAIPRMAGYLAHWRESLDDPDTKIMRPQQVYTGEWLRHYMPLKERMIQTDADRLGQVSISNASR RRLAGSGV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G58750		CSY2	citrate synthase 2 (.1)		Potri.016G089300 [exp]	0	1
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Potri.007G030900 [exp]	4.00	0.6127	RCE1.1
AT4G28540		CKL6, PAPK1	casein kinase I-like 6 (.1)		Potri.002G036000 [exp]	4.00	0.6066
AT3G10330			Cyclin-like family protein (.1...		Potri.016G057100 [exp]	12.48	0.6338	TFIIB1.3
AT1G23800		ALDH2B7	aldehyde dehydrogenase 2B7 (.1...		Potri.002G189900 [exp]	14.45	0.6042	ALDH2.1
AT3G50830		ATCOR413-PM2, C...	cold-regulated 413-plasma memb...		Potri.007G033801 [exp]	16.24	0.6846
AT3G02800		AtPFA-DSP3	plant and fungi atypical dual-...		Potri.013G086500 [exp]	30.44	0.6066
AT3G22950		ATARFC1	ADP-ribosylation factor C1 (.1...		Potri.012G139900 [exp]	37.30	0.6036
AT5G04910			unknown protein		Potri.008G012100 [exp]	37.74	0.5894
AT5G51830			pfkB-like carbohydrate kinase ...		Potri.015G134900 [exp]	42.70	0.5969
AT4G26060			Ribosomal protein L18ae family...		Potri.006G146300 [exp]	44.74	0.6072

Compare expression of checked genes

Potri.016G089300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.