Plant FIBer expression Database

Potri.016G089700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
ATCG00350 672 / 0 ATCG00350.1, PSAA Photosystem I, PsaA/PsaB protein (.1)
ATCG00340 227 / 5e-67 ATCG00340.1, PSAB Photosystem I, PsaA/PsaB protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G141912
[exp]
679 / 0 ATCG00350 1439 / 0.0 Photosystem I, PsaA/PsaB protein (.1)
Potri.007G062582
[exp]
582 / 0 ATCG00350 1143 / 0.0 Photosystem I, PsaA/PsaB protein (.1)
Potri.007G061601
[exp]
347 / 5e-119 ATCG00350 470 / 2e-163 Photosystem I, PsaA/PsaB protein (.1)
Potri.004G128501
[exp]
253 / 2e-80 ATCG00350 467 / 6e-160 Photosystem I, PsaA/PsaB protein (.1)
Potri.007G061621
[exp]
218 / 4e-67 ATCG00350 590 / 0.0 Photosystem I, PsaA/PsaB protein (.1)
Potri.013G142124
[exp]
226 / 1e-66 ATCG00340 1412 / 0.0 Photosystem I, PsaA/PsaB protein (.1)
Potri.009G016401
[exp]
63 / 2e-12 ATCG00350 130 / 5e-37 Photosystem I, PsaA/PsaB protein (.1)
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00223 PsaA_PsaB Photosystem I psaA/psaB protein
Representative CDS sequence
>Potri.016G089700.2 pacid=42809203 polypeptide=Potri.016G089700.2.p locus=Potri.016G089700 ID=Potri.016G089700.2.v4.1 annot-version=v4.1
ATGATTAATCGTTCGCCGGAACCAGAAGTAAAAATTTTGATAGATAGGGATCCCATCAAAACTTCTTTCGAGGAATGGGCTAGACCAGGTCATTTCTCAA
GAACAATAGCTAAAGGACATGATACTACCACTTGGATCTGGAACCTACATGCTGATGCTCATGATTTCGATAACCATACCAGTGATTTGGAAGAGATCTC
CCGAAAAGTCTTTAGTGCTCATTTCGGCCAACTCTCCATCATCTTTCTTTGGCTGAGTGGCATGTATTTCTACGGTCCTCATTTTTCCAATTATGAAGCA
TGGCTAAACGATCCTACTCATATTGGGCCTAGCGTCCAAGTAGTTTGGCCAATCGTGGGCCAAGAAATATTGAATGGTGATATTTGGAGAGCATCTGGAA
TAACTAGTGAATTACAATTGTATTGTACGACAATTGGTGCATTGGTCTTTGCAGCCTTAATGCTTTTTGTTGGTTGGTTCCATTATCACAAAGCTGCTCC
AAGATTGGCTTGGTTCCAAGATGTAGAATCTATGTTAAATCACCATTTAGCAGGGCTACTAGGGCTTGGGGAGCAACCTTATTTTTTGAATTGGTCAAAA
TATTTGAAATTTCTTACTTTTCGTGGAGGATTAGACCCATTAACTGGGGGTCTATGGCTGACTGATATTGCACACCACCATTTAGCTATCGCAATTCTTT
TCCTAGTAGCAGGTCACATGTGTAGGACTAACTGGGCCATTGGTTATGGTATAAAAGATATTTTAGAGGCTTATAAAGGGCCATTTATAGTAATGTTAGG
CTCTTTAACCATTGTTGTGGCTCACCATATGTATGTCATGCCCCTTTATCCATATCTAGCTACAGACTATGATACACAACTGTCATTGTTCACACATCAC
ATGTGGATTGGTGGATTTCTCATAGTTGGTGCTGCTGCACATGCAGCCATTTTTATGGTAAGAGACTACGATCTGACTACTCGATACAACAATCTGTTAG
ATCATCACCCTCAAGATATGTTTTCAGTTACTGCTATACAATTACAACCCGTCTTTGCTCAATTGATACAAAACATGCATGCTTTAGCACCTGGTGAAAC
GACTCTTGGTGCAACAGCAAGCACCATTGCTTTGTTACCTATTCCATTAGGAACCGCGGATTTTTTGGTCCGTCACATTCATGCATTTACAATTCATGTG
ACGATACTGATACTCCTGAAAGGAGTTCTATTTGCCTGTAGCTCTCATTTGATACCAGATGAAGCAAATCTTGGTTTTCGTTTCCTTTGA
AA sequence
>Potri.016G089700.2 pacid=42809203 polypeptide=Potri.016G089700.2.p locus=Potri.016G089700 ID=Potri.016G089700.2.v4.1 annot-version=v4.1
MINRSPEPEVKILIDRDPIKTSFEEWARPGHFSRTIAKGHDTTTWIWNLHADAHDFDNHTSDLEEISRKVFSAHFGQLSIIFLWLSGMYFYGPHFSNYEA
WLNDPTHIGPSVQVVWPIVGQEILNGDIWRASGITSELQLYCTTIGALVFAALMLFVGWFHYHKAAPRLAWFQDVESMLNHHLAGLLGLGEQPYFLNWSK
YLKFLTFRGGLDPLTGGLWLTDIAHHHLAIAILFLVAGHMCRTNWAIGYGIKDILEAYKGPFIVMLGSLTIVVAHHMYVMPLYPYLATDYDTQLSLFTHH
MWIGGFLIVGAAAHAAIFMVRDYDLTTRYNNLLDHHPQDMFSVTAIQLQPVFAQLIQNMHALAPGETTLGATASTIALLPIPLGTADFLVRHIHAFTIHV
TILILLKGVLFACSSHLIPDEANLGFRFL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
ATCG00350 ATCG00350.1, PS... Photosystem I, PsaA/PsaB prote... Potri.016G089700
[exp]
0 1
ATCG00490 ATCG00490.1, RB... ribulose-bisphosphate carboxyl... Potri.012G062601
[exp]
2.00 0.8813
ATCG00280 ATCG00280.1, PS... photosystem II reaction center... Potri.010G032700
[exp]
4.47 0.8243
ATCG00350 ATCG00350.1, PS... Photosystem I, PsaA/PsaB prote... Potri.007G061621
[exp]
6.32 0.8540
ATCG00350 ATCG00350.1, PS... Photosystem I, PsaA/PsaB prote... Potri.007G062582
[exp]
13.85 0.8057
ATCG00700 ATCG00700.1, PS... photosystem II reaction center... Potri.019G028300
[exp]
17.60 0.7495
Potri.013G092500
[exp]
20.97 0.6759
ATCG00490 ATCG00490.1, RB... ribulose-bisphosphate carboxyl... Potri.013G162700
[exp]
28.24 0.7271
ATCG00700 ATCG00700.1, PS... photosystem II reaction center... Potri.007G062182
[exp]
31.74 0.7343
ATCG00350 ATCG00350.1, PS... Photosystem I, PsaA/PsaB prote... Potri.004G128501
[exp]
32.86 0.7007
ATCG00680 ATCG00680.1, PS... photosystem II reaction center... Potri.017G140700
[exp]
38.96 0.7141

Potri.016G089700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.