Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30080 687 / 0 ARF ARF16 auxin response factor 16 (.1) AT2G28350 644 / 0 ARF ARF10 auxin response factor 10 (.1) AT1G77850 377 / 3e-122 ARF ARF17 auxin response factor 17 (.1) AT1G19850 271 / 2e-79 ARF IAA24, ARF5, MP MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT1G59750 260 / 4e-77 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT2G33860 251 / 5e-74 ARF ARF3, ETT ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT5G60450 251 / 1e-72 ARF ARF4 auxin response factor 4 (.1) AT5G62000 250 / 8e-72 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT5G37020 239 / 2e-68 ARF ARF8, ATARF8 auxin response factor 8 (.1.2) AT1G30330 237 / 6e-67 ARF ARF6 auxin response factor 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G127500 [exp] 1214 / 0 AT4G30080 677 / 0.0 auxin response factor 16 (.1) Potri.008G039000 [exp] 829 / 0 AT4G30080 749 / 0.0 auxin response factor 16 (.1) Potri.010G223200 [exp] 821 / 0 AT4G30080 777 / 0.0 auxin response factor 16 (.1) Potri.004G211700 [exp] 776 / 0 AT2G28350 777 / 0.0 auxin response factor 10 (.1) Potri.009G014800 [exp] 747 / 0 AT2G28350 706 / 0.0 auxin response factor 10 (.1) Potri.002G089900 [exp] 388 / 2e-126 AT1G77850 520 / 2e-179 auxin response factor 17 (.1) Potri.005G171300 [exp] 378 / 1e-122 AT1G77850 534 / 0.0 auxin response factor 17 (.1) Potri.005G236700 [exp] 274 / 4e-80 AT1G19850 1060 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Potri.002G024700 [exp] 269 / 3e-78 AT1G19850 1032 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026510 [exp] 840 / 0 AT4G30080 694 / 0.0 auxin response factor 16 (.1) Lus10019940 [exp] 771 / 0 AT4G30080 660 / 0.0 auxin response factor 16 (.1) Lus10023519 [exp] 609 / 0 AT4G30080 622 / 0.0 auxin response factor 16 (.1) Lus10040403 [exp] 607 / 0 AT4G30080 625 / 0.0 auxin response factor 16 (.1) Lus10021467 [exp] 494 / 9e-167 AT4G30080 588 / 0.0 auxin response factor 16 (.1) Lus10024754 [exp] 378 / 2e-122 AT1G77850 505 / 1e-173 auxin response factor 17 (.1) Lus10024753 [exp] 377 / 2e-122 AT1G77850 494 / 2e-169 auxin response factor 17 (.1) Lus10009770 [exp] 374 / 4e-121 AT1G77850 496 / 4e-170 auxin response factor 17 (.1) Lus10016091 [exp] 311 / 1e-100 AT4G30080 315 / 7e-103 auxin response factor 16 (.1) Lus10013942 [exp] 258 / 3e-76 AT2G33860 579 / 0.0 ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain CL0405 [poplar] [flax] PF06507 [poplar] [flax] Auxin_resp Auxin response factor
Representative CDS sequence Show only first row Show all	>Potri.016G090300.1 pacid=42809629 polypeptide=Potri.016G090300.1.p locus=Potri.016G090300 ID=Potri.016G090300.1.v4.1 annot-version=v4.1 ATGATAACATTTATGGAAGCGAAAGAGATTTTGAAAGAGGAGGCTGACAAGTGCTTAGATTCTCAGTTATGGCATGCCTGTGCCGGTGGCATGGTCCAAA TGCCGGCAGTGAATTCTAAGGTCTTCTACTTCCCTCAAGGCCATGCCGAGCATGCGTGTGAGCCTGTTGATTTCAGGAACTTGCCAGGTGCTTCTCACAC TCTATGCAGAGTCTCAGCTATCAAATTCATGGCTGACCCGGAAACTGACGAGGTCTTTGCTAAAATTAGGTTGGTTCCAATTAACTCTAATGAAATCGAT TTGGATGACCAAGAAGTTGCAGTTAATGGTGAAAAGGAAGCCGCACATGACAATAAGAAGCCGGTTTCCTTTGCCAAGACATTGACTCAATCTGATGCAA ACAATGGTGGAGGTTTCTCCGTGCCAAGGTACTGTGCTGAGATGATTTTTCCACGATTGGATTACACAGCAGATCCGCCTGTGCAGACCCTTCTTGCTAA GGATGTTCACGGTGAGACGTGGAAGTTTAGGCATATCTATAGAGGGACACCGAGAAGGCATCTTTTGACAACTGGATGGAGCCCATTTGTGAATCATAAG AAGCTTGTTGCTGGTGATTCTGTTGTGTTTTTGAGGGCGGAGAATGGAGATCTTTGCGTTGGTGTTCGAAGAGCTAAGAGGGCGATCAGTGGCGGACCCG AGTCCTTGTGGAATCCGGCTCTTGGGAATCTTGTAGTGCCTTATGGGGGATTTGGTGCGTTCTCGAGGGAGGATGAACATAAGATGGTGAAGAATGGAAG GGGGAATGGCAATGGTTCGAAGTCAAATGAAAGTTTGATGGGGCGAGGGAAAGTGAGGGCTGAATCGGTTATTCAAGCTGCTGTTCTTGCTGCAAATGGA CTGCCTTTTGAGACTGTTTACTATCCTCGAGCCAACACTCCCGAGTTCTTTGTGAAAGCCTCTTTGGTAAAAACAGTAATGCAGATCCGGTGGTGTTCAG GGATGCGGTTCAAGATGGCCTTTGAAACTGAGGACTCTTCTCGGATTAGTTGGTTCATGGGAACTGTTTGTTCTGTTCAGGATGCTGATCCTCTTTGCTG GCCAGGTTCACCGTGGAGACTTCTCCAGGTTACATGGGATGAGCCTGATTTGCTTCAAAATGTGAAACGTGTTAGCCCGTGGCTAGTGGAATTGGCATCA CATATGTCTGCCATCCATTTGTCCCCCTTCTCATCACCAAGGAAGAAGTTGAGACTTCCACAGCACCCGGATTTTCCCATCGACGGTCAATTTCCAATGC CGATATTTTCCGGCAACCTCCTTCAGCCCAGCAGTCCCTTTGGTTTTCTACCCAACAACATTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCACTATGG TCTACCACTATCAGATCTCAACCTCAATAAACTGCATACAGGTCTACTTCGGGCTGGTTTCCCGCCATTGCTTGATCATACTGCTTCACTCACAAAAGCC TCCAATATCCAAACCATTCAAAAGCCTATCTTGAGCGAAGGCGTTTCTTGTGAGCTGACCATGTCACATTCTACCCAGACTTCAAAGAGAGCTGATGATG TGAAGATACCTCAGCTTGTACTTTTTGGTCAACGAATAGTTGCTGAGCAGTATATCTCTCGTAGCTGCTCTGATAATACTGGCTCGCCAGTTCTTGCTAG AAATAGTTGTTTTGAAGGAAAATTAGATAAGATGGCAAAATTTTCTGAGGGATCTGTGTCCACTCTTCCTCATCGAGGCCTATCAAAGCATTCCTCATGT GAAGGATTGCAATGGAATAAGAACAACCACCGAAAGAGTGAGCAGTCCTTAGAGATTGGTCACTGCAAAGTTTTCCTCGAATCAGAAGATGTAGGTCGCA CCCTTGACCTTCAATTGCTTGAGTCTTATGAAGAATTGTATAGAAAGCTGGCTGACATGTTTGGCCTGCGGAATTCTGAGAAATTTAGCAATCTGCTCTA CCGTGACGATAATGGTATTACCAAACACATTGGCGAGGAACCATTCAGCAACTTCTCAAAAACAGCAAGGAGGCTGACAATTGTGACAAGATTCAGGCAG TGA
AA sequence Show only first row Show all	>Potri.016G090300.1 pacid=42809629 polypeptide=Potri.016G090300.1.p locus=Potri.016G090300 ID=Potri.016G090300.1.v4.1 annot-version=v4.1 MITFMEAKEILKEEADKCLDSQLWHACAGGMVQMPAVNSKVFYFPQGHAEHACEPVDFRNLPGASHTLCRVSAIKFMADPETDEVFAKIRLVPINSNEID LDDQEVAVNGEKEAAHDNKKPVSFAKTLTQSDANNGGGFSVPRYCAEMIFPRLDYTADPPVQTLLAKDVHGETWKFRHIYRGTPRRHLLTTGWSPFVNHK KLVAGDSVVFLRAENGDLCVGVRRAKRAISGGPESLWNPALGNLVVPYGGFGAFSREDEHKMVKNGRGNGNGSKSNESLMGRGKVRAESVIQAAVLAANG LPFETVYYPRANTPEFFVKASLVKTVMQIRWCSGMRFKMAFETEDSSRISWFMGTVCSVQDADPLCWPGSPWRLLQVTWDEPDLLQNVKRVSPWLVELAS HMSAIHLSPFSSPRKKLRLPQHPDFPIDGQFPMPIFSGNLLQPSSPFGFLPNNIPAGMQGARHAHYGLPLSDLNLNKLHTGLLRAGFPPLLDHTASLTKA SNIQTIQKPILSEGVSCELTMSHSTQTSKRADDVKIPQLVLFGQRIVAEQYISRSCSDNTGSPVLARNSCFEGKLDKMAKFSEGSVSTLPHRGLSKHSSC EGLQWNKNNHRKSEQSLEIGHCKVFLESEDVGRTLDLQLLESYEELYRKLADMFGLRNSEKFSNLLYRDDNGITKHIGEEPFSNFSKTARRLTIVTRFRQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Potri.016G090300 [exp]	0	1
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Potri.001G353700 [exp]	5.56	0.8860
AT4G14090			UDP-Glycosyltransferase superf...		Potri.017G101800 [exp]	9.32	0.8823
AT5G10490		MSL2	MSCS-like 2 (.1.2.3)		Potri.007G011100 [exp]	9.48	0.8843
AT1G13960	WRKY	WRKY4	WRKY DNA-binding protein 4 (.1...		Potri.010G163000 [exp]	12.64	0.8535	Pt-WRKY3.2
AT1G24490		ALB4, ARTEMIS	ARABIDOPSIS THALIANA ENVELOPE ...		Potri.008G182000 [exp]	12.84	0.8700
AT3G29400		ATEXO70E1	exocyst subunit exo70 family p...		Potri.017G093966 [exp]	14.49	0.8489
AT3G54200			Late embryogenesis abundant (L...		Potri.016G142300 [exp]	15.49	0.8513
AT5G65110		ATACX2, ACX2	acyl-CoA oxidase 2 (.1.2)		Potri.007G090400 [exp]	15.74	0.8760
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.011G121200 [exp]	15.87	0.8700
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Potri.001G023500 [exp]	17.32	0.8479

Compare expression of checked genes

Potri.016G090300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.