Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03250 768 / 0 Phototropic-responsive NPH3 family protein (.1) AT1G30440 630 / 0 Phototropic-responsive NPH3 family protein (.1) AT5G13600 624 / 0 Phototropic-responsive NPH3 family protein (.1) AT3G44820 452 / 9e-152 Phototropic-responsive NPH3 family protein (.1) AT5G66560 438 / 4e-146 Phototropic-responsive NPH3 family protein (.1) AT3G50840 386 / 5e-127 Phototropic-responsive NPH3 family protein (.1) AT5G64330 386 / 6e-125 JK218, RPT3, NPH3 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) AT5G48800 357 / 2e-115 Phototropic-responsive NPH3 family protein (.1) AT5G67385 354 / 3e-114 Phototropic-responsive NPH3 family protein (.1) AT1G03010 336 / 7e-107 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G038600 [exp] 787 / 0 AT5G03250 723 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.010G223600 [exp] 751 / 0 AT5G03250 683 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.001G357100 [exp] 659 / 0 AT1G30440 971 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.011G091100 [exp] 637 / 0 AT1G30440 924 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.004G189800 [exp] 465 / 6e-157 AT3G44820 835 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.009G150500 [exp] 463 / 3e-156 AT3G44820 826 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.007G033900 [exp] 456 / 2e-153 AT5G66560 789 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.005G130700 [exp] 442 / 2e-147 AT5G66560 733 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.017G048200 [exp] 419 / 1e-138 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013799 [exp] 757 / 0 AT5G03250 672 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10026511 [exp] 739 / 0 AT5G03250 665 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023523 [exp] 691 / 0 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10015871 [exp] 690 / 0 AT5G03250 666 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10040409 [exp] 688 / 0 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10009292 [exp] 687 / 0 AT5G03250 670 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023274 [exp] 627 / 0 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10038531 [exp] 622 / 0 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10037432 [exp] 459 / 1e-154 AT5G66560 747 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10041276 [exp] 453 / 4e-152 AT5G66560 750 / 0.0 Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [poplar] [flax] POZ PF00651 [poplar] [flax] BTB BTB/POZ domain CL0033 [poplar] [flax] PF03000 [poplar] [flax] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Potri.016G090400.1 pacid=42809850 polypeptide=Potri.016G090400.1.p locus=Potri.016G090400 ID=Potri.016G090400.1.v4.1 annot-version=v4.1 ATGGCGTCCATGAAGTTGGGCTCAAAAACTGATGGCTTTCACCGTGATGGAAATACTTGGTATTGCACAACTGGGCTTCCAAGTGATGTTACCATTGAGG TTGGGGAAATGACTTTCAATCTCCACAAGTTTCCATTGCTTTCAAGAAGTGGGCTTCTAGAGAAGCTTATTGAAGAGCTTTCTATTGAGGATGGATCTGT TTCTGTCTTGAAACTTAATGACATGCCTGCTGGTGCTAAAGCTTTTGAACTTATAGCCAGATTTTGCTATGGTATCAAAATAGAGATGACTTCTTTGAAT GTGGTTAGCCTTAGATGTGCAGCAGAGTACCTTCGCATGACTGAAGATTATGGAGAAGGGAATCTCATTGTGCAAGCAGAGGCTTTCCTTGACGAAGTCT TTGGCAGTTGGACAGACTCCATAAAAGCTCTTGAAACTTGTGAAGAAGTTCTGCCTTATGCAGAAGAAATTCACATTGTTCCAAGGTGCATCGATTCCTT AGCAATGAAAGCTTGTGCAGATCCAAACGTGTTTAATTTGCCTGTTGCGGGACAACCTGACGCCCCAAGCCAGAGAGACGTTATCTTATGGAATGGTATA TCATCTTCTGCAAATAAACCACAACCCATCAGTGAAGACTGGTGGTTCCAAGATGTCTCATTCCTCAACTTACCTCTCTACAAAAGACTGATTTTAGCTG TTGAATCAAGAGGCATGAAACCCGAGACTATTTCTGCTTCCCTAATATATTATGCCAAGAGATATCTCCCCTTGATGAGTAGACAATCAAGCTTTGACCA TGCCAACAATGGCAATCCTTGGGCAACTGTTTCCATCCCTTCTGAGACAGATCAAAGGGTTCTCCTAGAAGAGATCGTGACATTATTACCTAAAAAAAGG GGAGTCACATCCCCCGAGTTTTTGATTATGCTGCTACGTACAGCTATGGTTTTGCATGCAAGTCCATTATGCAGAGAAAATTTGGAGAAAAAGGCGGGAG CCCAGTTAGACCAAGCAGTACTTGTAGATCTTCTCATTCCAAATATGGGTTATTCAGTGGAAACCCTTTATGATATAGATTGTGCTCAAAGAATGCTAGA CCATTTTATGTCTCTAAATCAAGACGCAGCTTTATCAACCCCCCCCTGCATAGTTGAAGAAGGCCAGTTTCTGGGCGGCCCTGATACACTACAACCATTG ACTATGGTGGCCAGTCTGGTGGATGGATTTCTTGCTGAGGTTGCACCAGATGTAAATTTGAAGCCCTCAAAATTTGAGTCACTTGCATCGACCATCCCAG ATTATGCCAGGCCACTTGATGATGGAGTTTATCATGCTATTGATGTATACCTCAAGGCTCATCCTTGGCTTACAGATACAGAAAAGGAGCAGCTTTGCAG ACTTATGAACTGCCAGAAGCTCTCACTGGAAGCCTGCACTCATGCAGCTCAGAATGAGAGGCTACCTCTTCGGGTAATTGTCCAAGTCCTCTTCTTCGAG CAACTTCGGCTTCGGACATCAATTTCTGGATGGTTCTATGTCTCTGAGAATCTTGACAACTCACAAAATCCTTGTGGAAGCCTTGAACTTCCCAAAAATG ATGGTTCTCATCAAATAAACTCTAAAGGCCGAACTGTGGGCGTTGATGACGTGAAGGAGCGTGTTTCTGAGCTTGAAAAGGAATGTTTGACAATGAAACA AGATCTTCAAAAGATCCTAAAGACAAAGAGAAGCTGGAAGATATTTTCCAAGACATTCGGGTTTAGACGCAAACTACAGCCCTGCAATTCAAAAGAATCA TGTGAACTGAAAGAGCCGGAAGCATCTGCAAATGGACTCCAGAATCATGAGAATGGTGGCTTGCCTCAGTAG
AA sequence Show only first row Show all	>Potri.016G090400.1 pacid=42809850 polypeptide=Potri.016G090400.1.p locus=Potri.016G090400 ID=Potri.016G090400.1.v4.1 annot-version=v4.1 MASMKLGSKTDGFHRDGNTWYCTTGLPSDVTIEVGEMTFNLHKFPLLSRSGLLEKLIEELSIEDGSVSVLKLNDMPAGAKAFELIARFCYGIKIEMTSLN VVSLRCAAEYLRMTEDYGEGNLIVQAEAFLDEVFGSWTDSIKALETCEEVLPYAEEIHIVPRCIDSLAMKACADPNVFNLPVAGQPDAPSQRDVILWNGI SSSANKPQPISEDWWFQDVSFLNLPLYKRLILAVESRGMKPETISASLIYYAKRYLPLMSRQSSFDHANNGNPWATVSIPSETDQRVLLEEIVTLLPKKR GVTSPEFLIMLLRTAMVLHASPLCRENLEKKAGAQLDQAVLVDLLIPNMGYSVETLYDIDCAQRMLDHFMSLNQDAALSTPPCIVEEGQFLGGPDTLQPL TMVASLVDGFLAEVAPDVNLKPSKFESLASTIPDYARPLDDGVYHAIDVYLKAHPWLTDTEKEQLCRLMNCQKLSLEACTHAAQNERLPLRVIVQVLFFE QLRLRTSISGWFYVSENLDNSQNPCGSLELPKNDGSHQINSKGRTVGVDDVKERVSELEKECLTMKQDLQKILKTKRSWKIFSKTFGFRRKLQPCNSKES CELKEPEASANGLQNHENGGLPQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03250			Phototropic-responsive NPH3 fa...		Potri.016G090400 [exp]	0	1
AT3G25570			Adenosylmethionine decarboxyla...		Potri.010G133900 [exp]	3.74	0.6751	SAMDC.2
AT5G11960			Protein of unknown function (D...		Potri.006G226000 [exp]	4.24	0.7234
AT5G46800		BOU	A BOUT DE SOUFFLE, Mitochondri...		Potri.003G091500 [exp]	5.09	0.7568	Pt-BOU.2
AT1G62400		HT1	high leaf temperature 1, Prote...		Potri.015G075200 [exp]	5.65	0.6833
AT3G59350			Protein kinase superfamily pro...		Potri.017G036300 [exp]	18.49	0.6257
					Potri.012G070801 [exp]	20.24	0.6225
AT4G10050			esterase/lipase/thioesterase f...		Potri.019G072900 [exp]	25.80	0.6667
AT1G21320			nucleotide binding;nucleic aci...		Potri.006G224900 [exp]	27.22	0.6625
AT1G04650			unknown protein		Potri.001G053000 [exp]	29.59	0.6844
AT1G11790		AtADT1, ADT1	Arabidopsis thaliana arogenate...		Potri.011G004700 [exp]	31.17	0.6549

Compare expression of checked genes

Potri.016G090400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.