Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RBP29.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37220 302 / 3e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G24770 199 / 2e-62 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT5G50250 195 / 3e-61 CP31B chloroplast RNA-binding protein 31B (.1) AT1G60000 169 / 2e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G52380 167 / 6e-50 CP33, PDE322 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) AT3G53460 165 / 5e-49 CP29 chloroplast RNA-binding protein 29 (.1.2.3.4) AT3G52150 135 / 2e-38 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G35410 114 / 7e-30 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G01080 108 / 7e-28 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G18510 96 / 2e-22 EMB2444 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G127200 [exp] 353 / 3e-123 AT2G37220 269 / 5e-90 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G090200 [exp] 200 / 9e-63 AT4G24770 310 / 7e-105 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.001G340800 [exp] 190 / 3e-59 AT4G24770 322 / 2e-110 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.015G086500 [exp] 191 / 5e-59 AT4G24770 290 / 6e-97 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.008G172100 [exp] 181 / 5e-56 AT1G60000 288 / 5e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.010G065600 [exp] 168 / 5e-51 AT1G60000 287 / 9e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G068300 [exp] 155 / 2e-45 AT3G52380 264 / 5e-87 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Potri.006G202000 [exp] 154 / 8e-45 AT3G52380 270 / 2e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Potri.009G065900 [exp] 133 / 2e-37 AT3G52150 237 / 2e-78 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026514 [exp] 286 / 5e-97 AT2G37220 284 / 4e-96 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10002222 [exp] 255 / 1e-84 AT3G53460 263 / 1e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10023191 [exp] 252 / 3e-83 AT3G53460 263 / 2e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10013801 [exp] 251 / 3e-80 AT3G53460 258 / 2e-82 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10029372 [exp] 180 / 6e-55 AT3G52380 269 / 6e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10016174 [exp] 172 / 7e-52 AT3G52380 275 / 3e-91 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10041952 [exp] 169 / 2e-50 AT5G50250 272 / 2e-90 chloroplast RNA-binding protein 31B (.1) Lus10017962 [exp] 167 / 4e-50 AT5G50250 274 / 5e-92 chloroplast RNA-binding protein 31B (.1) Lus10023723 [exp] 164 / 2e-48 AT1G60000 259 / 1e-85 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10010262 [exp] 125 / 4e-33 AT3G52150 262 / 5e-86 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.016G090700.3 pacid=42809174 polypeptide=Potri.016G090700.3.p locus=Potri.016G090700 ID=Potri.016G090700.3.v4.1 annot-version=v4.1 ATGTCTGCAGCATCTGCCTCTTCACTGGTCCTCCCATCGCTCAATCACCCAAATACCATAAAATCTTTCTACAGCAAACCCAATTCACTCTTTTTTCTAT CTCCTTCTTCCACTTCTTCTCTCAAGCCCGTTTCTCTCCTTCTCTCCTTTCAACACCAGCAACAGCCTCTGTCCTCTCGGTTTCTAAAAAATGTTGCCAT TTCATCTGAATTCGGACAAGAAGAGGATTTCTTGAGTGATGGGGACGAGCAAAGTTTCTCTCAAGACCTCAAATTGTTTGTGGGTAATCTTCCTTTTAAT GTTGACAGTGCCCGGCTCGCTGGTCTCTTTGAAACCGCTGGAAATGTTGAGATGGTTGAGGTAATATATGACAAGGTAACTGGGAGAAGCAGAGGATTTG GTTTTGTGACCATGACGACTATTGAAGAAGTTGAAGCAGCATCTAAACAGTTCAATGGCTATGAACTCGATGGGAGGACATTGAGGGTGAATTTTGGACC TCCTCCTCAGAAGGAAAGTTCCTTTTCAAGAGGGCCTAGAGGTGGTGAAACATTTGATTCTGGCAATCGTGTTTATGTCGGCAACCTTTCATGGAATGTT GATAACTTGGCACTTGAGACATTGTTTAGAGAGAAAGGGAGGGTGATGGATGCTAAAGTTGTTTATGACAGGGATAGTGGTAGATCAAGGGGCTTTGGTT TTGTTACTTATAGTTCTGCTGAAGAGGTTGACAATGCCATTGACTCCCTAAATGGCGCTGAATTGGATGGCAGAGCAATTCGGGTCTCAGTTGCAGAAGC TAAGCCAAGGCGTCAATTTTGA
AA sequence Show only first row Show all	>Potri.016G090700.3 pacid=42809174 polypeptide=Potri.016G090700.3.p locus=Potri.016G090700 ID=Potri.016G090700.3.v4.1 annot-version=v4.1 MSAASASSLVLPSLNHPNTIKSFYSKPNSLFFLSPSSTSSLKPVSLLLSFQHQQQPLSSRFLKNVAISSEFGQEEDFLSDGDEQSFSQDLKLFVGNLPFN VDSARLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMTTIEEVEAASKQFNGYELDGRTLRVNFGPPPQKESSFSRGPRGGETFDSGNRVYVGNLSWNV DNLALETLFREKGRVMDAKVVYDRDSGRSRGFGFVTYSSAEEVDNAIDSLNGAELDGRAIRVSVAEAKPRRQF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37220			RNA-binding (RRM/RBD/RNP motif...		Potri.016G090700 [exp]	0	1	RBP29.1
AT3G63490		EMB3126	EMBRYO DEFECTIVE 3126, Ribosom...		Potri.009G057100 [exp]	1.00	0.9922	Pt-RPL1.1
AT4G24770		CP31, ATRBP33, ...	ARABIDOPSIS THALIANA RNA BINDI...		Potri.012G090200 [exp]	1.41	0.9906
AT3G63490		EMB3126	EMBRYO DEFECTIVE 3126, Ribosom...		Potri.001G262400 [exp]	1.73	0.9882	RPL1.2
AT2G38780			unknown protein		Potri.001G024200 [exp]	2.44	0.9846
AT1G51080			unknown protein		Potri.008G004800 [exp]	3.74	0.9834
AT1G63970		MECPS, ISPF	2C-METHYL-D-ERYTHRITOL 2,4-CYC...		Potri.001G099300 [exp]	4.00	0.9860
AT1G32220			NAD(P)-binding Rossmann-fold s...		Potri.001G136900 [exp]	4.69	0.9810
AT1G20810			FKBP-like peptidyl-prolyl cis-...		Potri.005G254900 [exp]	5.65	0.9819
AT1G32060		PRK	phosphoribulokinase (.1)		Potri.003G099400 [exp]	5.91	0.9852
AT5G03940		SRP54CP, CPSRP5...	SIGNAL RECOGNITION PARTICLE 54...		Potri.006G211500 [exp]	6.70	0.9796	Pt-FFC.2

Compare expression of checked genes

Potri.016G090700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.